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    LOC9266372 external alternative NAD(P)H-ubiquinone oxidoreductase B2, mitochondrial [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 9266372, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC9266372
    Gene description
    external alternative NAD(P)H-ubiquinone oxidoreductase B2, mitochondrial
    Locus tag
    OSNPB_080141400
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OJ1368_G08.31
    Expression
    Broad expression in roots before flowering (RPKM 35.3), mature seeds (RPKM 24.8) and 5 other tissues See more
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    Genomic context

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    See LOC9266372 in Genome Data Viewer
    Location:
    chromosome: 8
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 8 NC_089042.1 (2322305..2327533, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 8 NC_029263.1 (2310031..2315272, complement)

    Chromosome 8 - NC_089042.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4344639 Neighboring gene uncharacterized LOC107282062 Neighboring gene vesicle-associated protein 4-1 Neighboring gene uncharacterized LOC4344642 Neighboring gene uncharacterized LOC9271298

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables NADH dehydrogenase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables calcium ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in NADH oxidation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    external alternative NAD(P)H-ubiquinone oxidoreductase B2, mitochondrial
    Names
    Os08g0141400
    P0473D02.16
    putative NADH dehydrogenase

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089042.1 Reference ASM3414082v1 Primary Assembly

      Range
      2322305..2327533 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015794706.3 → XP_015650192.1  external alternative NAD(P)H-ubiquinone oxidoreductase B2, mitochondrial

      UniProtKB/TrEMBL
      A2YR42, A3BPJ0
      Conserved Domains (2) summary
      PTZ00318
      Location:56 → 580
      PTZ00318; NADH dehydrogenase-like protein; Provisional
      cl08302
      Location:382 → 457
      EFh; EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to ...
    Nucleotide Protein
    Heading Accession and Version

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