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    LOC4326844 disease resistance protein Pik-2-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4326844, updated on 21-Dec-2023

    Summary

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    Gene symbol
    LOC4326844
    Gene description
    disease resistance protein Pik-2-like
    Locus tag
    OSNPB_010335700
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Broad expression in leaves after flowering (RPKM 10.2), roots after flowering (RPKM 9.5) and 6 other tissues See more
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    Genomic context

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    See LOC4326844 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    102 current IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (13141831..13144941, complement)

    Chromosome 1 - NC_029256.1Genomic Context describing neighboring genes Neighboring gene small nucleolar RNA Z119 Neighboring gene prostatic spermine-binding protein Neighboring gene uncharacterized LOC112939698 Neighboring gene uncharacterized LOC112937699 Neighboring gene uncharacterized LOC9268353

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_029256.1 Chromosome 1 Reference IRGSP-1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ADP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in defense response to other organism IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    disease resistance protein Pik-2-like
    Names
    B1158F07.35
    Os01g0335700
    putative NB-ARC domain-containing protein
    putative stripe rust resistance protein Yr10

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference IRGSP-1.0 Primary Assembly

    Genomic

    1. NC_029256.1 Reference IRGSP-1.0 Primary Assembly

      Range
      13141831..13144941 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015766945.2 → XP_015622431.1  disease resistance protein Pik-2-like

      UniProtKB/TrEMBL
      A0A0N7KCW3, A0A979HJH9, A2WPG2, Q0JN28, Q943S7
      Conserved Domains (3) summary
      COG4886
      Location:588 → 788
      LRR; Leucine-rich repeat (LRR) protein [Transcription]
      cd14798
      Location:4 → 148
      RX-CC_like; Coiled-coil domain of the potato virux X resistance protein and similar proteins
      pfam00931
      Location:188 → 431
      NB-ARC; NB-ARC domain
    Nucleotide Protein
    Heading Accession and Version

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