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    LOC4331247 uncharacterized LOC4331247 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4331247, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4331247
    Gene description
    uncharacterized LOC4331247
    Locus tag
    OSNPB_020830801
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OJ1149_C12.3
    Expression
    Ubiquitous expression in flowers (RPKM 10.3), flower buds (RPKM 8.2) and 6 other tissues See more
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    Genomic context

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    See LOC4331247 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    17
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (36216642..36229309)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (35717764..35730500)

    Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene two-component response regulator ORR3 Neighboring gene uncharacterized LOC107276946 Neighboring gene inactive leucine-rich repeat receptor-like serine/threonine-protein kinase At1g60630 Neighboring gene serine/threonine-protein phosphatase 7 long form homolog Neighboring gene uncharacterized LOC107280076

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in cell morphogenesis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cell cortex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in site of polarized growth IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    uncharacterized protein LOC4331247
    Names
    Os02g0830801
    Os02g0830900
    protein furry

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

      Range
      36216642..36229309
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015770237.3 → XP_015625723.1  uncharacterized protein LOC4331247 isoform X1

      UniProtKB/TrEMBL
      A2XBB1, A3AD04
      Conserved Domains (3) summary
      pfam14228
      Location:622 → 1734
      MOR2-PAG1_mid; Cell morphogenesis central region
      pfam14222
      Location:85 → 585
      MOR2-PAG1_N; Cell morphogenesis N-terminal
      pfam14225
      Location:1759 → 2047
      MOR2-PAG1_C; Cell morphogenesis C-terminal

    2. XM_066307291.1 → XP_066163388.1  uncharacterized protein LOC4331247 isoform X2

    Nucleotide Protein
    Heading Accession and Version

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