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    LOC4341956 mitogen-activated protein kinase 4-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4341956, updated on 17-Jul-2024

    Summary

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    Gene symbol
    LOC4341956
    Gene description
    mitogen-activated protein kinase 4-like
    Locus tag
    OSNPB_060699400
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    MAP2; MPK4; OsMAP2; msrmk3; OsMSRMK3; OsJ_22520
    Expression
    Ubiquitous expression in roots before flowering (RPKM 61.2), leaves after flowering (RPKM 60.3) and 6 other tissues See more
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    Genomic context

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    Location:
    chromosome: 6
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 6 NC_089040.1 (30264838..30269216)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 6 NC_029261.1 (29398187..29402473)

    Chromosome 6 - NC_089040.1Genomic Context describing neighboring genes Neighboring gene acyl transferase 15-like Neighboring gene acyl transferase 15-like Neighboring gene probable inactive purple acid phosphatase 28 Neighboring gene macrophage migration inhibitory factor homolog Neighboring gene protein CHLOROPLAST IMPORT APPARATUS 2

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Expressing OsMPK4 Impairs Plant Growth but Enhances the Resistance of Rice to the Striped Stem Borer Chilo suppressalis. Liu X, et al. Int J Mol Sci, 2018 Apr 13. PMID 29652796, Free PMC Article
    2. Novel rice MAP kinases OsMSRMK3 and OsWJUMK1 involved in encountering diverse environmental stresses and developmental regulation. Agrawal GK, et al. Biochem Biophys Res Commun, 2003 Jan 17. PMID 12507518
    3. Large-scale identification of expressed sequence tags involved in rice and rice blast fungus interaction. Jantasuriyarat C, et al. Plant Physiol, 2005 May. PMID 15888683, Free PMC Article
    4. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables MAP kinase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in intracellular signal transduction IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in protein phosphorylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    mitogen-activated protein kinase 4
    Names
    LOC_Os06g48590
    MAP kinase 2
    MAP kinase 4
    Multiple stress-responsive MAP kinase 3
    P0468G03.11
    putative mitogen-activated protein kinase, msrmk3
    NP_001408762.1
    XP_015643565.1
    XP_015643566.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001421833.1 → NP_001408762.1  mitogen-activated protein kinase 4

      Status: VALIDATED

      Source sequence(s)
      CB661478, CB674265, CB684361, CI356201, CI570530
      UniProtKB/Swiss-Prot
      Q0D9T8, Q5Z859, Q8H0P1, Q9FQM2, Q9SMA9
      UniProtKB/TrEMBL
      A2YGN3, Q0PIU5

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089040.1 Reference ASM3414082v1 Primary Assembly

      Range
      30264838..30269216
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015788079.3 → XP_015643565.1  mitogen-activated protein kinase 4 isoform X1

      UniProtKB/Swiss-Prot
      Q0D9T8, Q5Z859, Q8H0P1, Q9FQM2, Q9SMA9
      UniProtKB/TrEMBL
      A2YGN3, Q0PIU5
      Conserved Domains (1) summary
      cd07858
      Location:26 → 361
      STKc_TEY_MAPK; Catalytic domain of the Serine/Threonine Kinases, Plant TEY Mitogen-Activated Protein Kinases

    2. XM_015788080.3 → XP_015643566.1  mitogen-activated protein kinase 4 isoform X1

      UniProtKB/Swiss-Prot
      Q0D9T8, Q5Z859, Q8H0P1, Q9FQM2, Q9SMA9
      UniProtKB/TrEMBL
      A2YGN3, Q0PIU5
      Conserved Domains (1) summary
      cd07858
      Location:26 → 361
      STKc_TEY_MAPK; Catalytic domain of the Serine/Threonine Kinases, Plant TEY Mitogen-Activated Protein Kinases
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q5Z859.1 GenPept UniProtKB/Swiss-Prot:Q5Z859

    Gene LinkOut

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    Molecular Biology Databases
    Research Materials