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    LOC9267109 succinate-semialdehyde dehydrogenase, mitochondrial-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 9267109, updated on 17-Jul-2024

    Summary

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    Gene symbol
    LOC9267109
    Gene description
    succinate-semialdehyde dehydrogenase, mitochondrial-like
    Locus tag
    OSNPB_020173900
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    SSADH1; ALDH5F1; OsJ_05574
    Expression
    Ubiquitous expression in mature seeds (RPKM 87.0), flowers (RPKM 51.0) and 6 other tissues See more
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    Genomic context

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    Location:
    chromosome: 2
    Exon count:
    20
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (4053626..4061440)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (4044585..4052204)

    Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4328457 Neighboring gene ALA-interacting subunit 1 Neighboring gene myb family transcription factor IPN2 Neighboring gene squamosa promoter-binding-like protein 4

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Towards the understanding of the cocoa transcriptome: Production and analysis of an exhaustive dataset of ESTs of Theobroma cacao L. generated from various tissues and under various conditions. Argout X, et al. BMC Genomics, 2008 Oct 30. PMID 18973681, Free PMC Article
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    Pathways from PubChem

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    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables succinate-semialdehyde dehydrogenase (NAD+) activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in gamma-aminobutyric acid catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    succinate-semialdehyde dehydrogenase, mitochondrial
    Names
    Aldehyde dehydrogenase family 5 member F1
    LOC_Os02g07760
    NAD(+)-dependent succinic semialdehyde dehydrogenase
    NP_001411085.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001424156.1 → NP_001411085.1  succinate-semialdehyde dehydrogenase, mitochondrial

      Status: VALIDATED

      Source sequence(s)
      CI071430, CI345746, CI576237, CU606989
      UniProtKB/Swiss-Prot
      B9F3B6, C7IY98
      UniProtKB/TrEMBL
      B8AIJ7

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

      Range
      4053626..4061440
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    B9F3B6.1 GenPept UniProtKB/Swiss-Prot:B9F3B6

    Gene LinkOut

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