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    LOC4325900 callose synthase 12 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4325900, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4325900
    Gene description
    callose synthase 12
    Locus tag
    OSNPB_010672500
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    P0485G01.3
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    Genomic context

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    See LOC4325900 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (28193174..28200033, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (27605899..27612807, complement)

    Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene homeobox-DDT domain protein RLT2 Neighboring gene protein DEHYDRATION-INDUCED 19 homolog 3-like Neighboring gene small nucleolar RNA J33 Neighboring gene uncharacterized LOC4325901 Neighboring gene uncharacterized LOC4325902

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables 1,3-beta-D-glucan synthase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in (1->3)-beta-D-glucan biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of 1,3-beta-D-glucan synthase complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    callose synthase 12
    Names
    1,3-beta-glucan synthase component-like
    Os01g0672500
    P0007F06.13

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

      Range
      28193174..28200033 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015795226.3 → XP_015650712.1  callose synthase 12

      UniProtKB/TrEMBL
      B8A790, Q8W0J2
      Conserved Domains (2) summary
      pfam02364
      Location:857 → 1635
      Glucan_synthase; 1,3-beta-glucan synthase component
      pfam14288
      Location:154 → 265
      FKS1_dom1; 1,3-beta-glucan synthase subunit FKS1, domain-1

    2. XM_015795233.3 → XP_015650719.1  callose synthase 12

      UniProtKB/TrEMBL
      B8A790, Q8W0J2
      Conserved Domains (2) summary
      pfam02364
      Location:857 → 1635
      Glucan_synthase; 1,3-beta-glucan synthase component
      pfam14288
      Location:154 → 265
      FKS1_dom1; 1,3-beta-glucan synthase subunit FKS1, domain-1
    Nucleotide Protein
    Heading Accession and Version

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