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    LOC4343199 protein SET DOMAIN GROUP 40 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4343199, updated on 10-Oct-2024

    Summary

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    Gene symbol
    LOC4343199
    Gene description
    protein SET DOMAIN GROUP 40
    Locus tag
    OSNPB_070471100
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OJ1103_E04.112
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    Genomic context

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    See LOC4343199 in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 7 NC_089041.1 (17052323..17055601)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 7 NC_029262.1 (16886906..16890289)

    Chromosome 7 - NC_089041.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4343196 Neighboring gene uncharacterized LOC4343197 Neighboring gene serine/threonine-protein kinase/endoribonuclease IRE1-like Neighboring gene protein argonaute 18-like Neighboring gene uncharacterized LOC4343202

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein-lysine N-methyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in peptidyl-lysine monomethylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    protein SET DOMAIN GROUP 40
    Names
    Os07g0471100
    P0675B10.102
    SET-domain transcriptional regulator family-like protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089041.1 Reference ASM3414082v1 Primary Assembly

      Range
      17052323..17055601
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015789317.2 → XP_015644803.1  protein SET DOMAIN GROUP 40 isoform X1

      UniProtKB/TrEMBL
      B8B5Y2, B9FX52, Q0D6K2, Q8L459
      Conserved Domains (2) summary
      cd10527
      Location:32 → 288
      SET_LSMT; SET domain found in Rubisco large subunit methyltransferase (LSMT) and similar proteins
      pfam09273
      Location:305 → 389
      Rubis-subs-bind; Rubisco LSMT substrate-binding

    2. XM_066312591.1 → XP_066168688.1  protein SET DOMAIN GROUP 40 isoform X2

    Nucleotide Protein
    Heading Accession and Version

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