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    snt1 Set3 complex SANT/Myb domain subunit Snt1 [ Schizosaccharomyces pombe (fission yeast) ]

    Gene ID: 2541792, updated on 18-Sep-2024

    Summary

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    Official Symbol
    snt1
    Official Full Name
    Set3 complex SANT/Myb domain subunit Snt1
    Primary source
    PomBase:SPAC22E12.19
    Locus tag
    SPOM_SPAC22E12.19
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Schizosaccharomyces pombe (strain: 972h-)
    Lineage
    Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces
    Also known as
    SPAC2E12.01
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    Genomic context

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    See snt1 in Genome Data Viewer
    Location:
    chromosome: I
    Exon count:
    1
    Sequence:
    Chromosome: I; NC_003424.3 (5056621..5059053)

    Chromosome I - NC_003424.3Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene uncharacterized protein Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene DNA-binding transcription factor Hsf1

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003424.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The SET domain protein, Set3p, promotes the reliable execution of cytokinesis in Schizosaccharomyces pombe. Rentas S, et al. PLoS One, 2012. PMID 22347452, Free PMC Article
    2. A conserved histone deacetylase with a role in the regulation of cytokinesis in Schizosaccharomyces pombe. Grewal C, et al. Cell Div, 2012 May 4. PMID 22559741, Free PMC Article
    3. Genetic Interaction Landscape Reveals Critical Requirements for Schizosaccharomyces pombe Brc1 in DNA Damage Response Mutants. Sánchez A, et al. G3 (Bethesda), 2015 Mar 19. PMID 25795664, Free PMC Article
    4. Chromatin Central: towards the comparative proteome by accurate mapping of the yeast proteomic environment. Shevchenko A, et al. Genome Biol, 2008. PMID 19040720, Free PMC Article
    5. Transcription and chromatin-based surveillance mechanism controls suppression of cryptic antisense transcription. Heo DH, et al. Cell Rep, 2021 Sep 7. PMID 34496258, Free PMC Article

    See all (15) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by PomBase

    Function Evidence Code Pubs
    enables DNA binding ISM
    Inferred from Sequence Model
    more info
    		  
    contributes_to transcription corepressor activity IC
    Inferred by Curator
    more info
    		  
    Process Evidence Code Pubs
    involved_in negative regulation of gene expression, epigenetic IC
    Inferred by Curator
    more info
    		  
    Component Evidence Code Pubs
    part_of Rpd3L-Expanded complex IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    part_of Set3 complex EXP
    Inferred from Experiment
    more info
    		 PubMed 
    part_of Set3 complex IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    is_active_in nucleus HDA PubMed 
    is_active_in nucleus IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    Set3 complex SANT/Myb domain subunit Snt1

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003424.3 Reference assembly

      Range
      5056621..5059053
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001020274.3 → NP_594845.2  Set3 complex SANT/Myb domain subunit Snt1 [Schizosaccharomyces pombe]

      See identical proteins and their annotated locations for NP_594845.2

      Status: PROVISIONAL

      UniProtKB/Swiss-Prot
      Q10226, Q10369, Q9USA7
      Conserved Domains (2) summary
      smart00717
      Location:251 → 295
      SANT; SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains
      cd00167
      Location:251 → 293
      SANT; 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is ...
    Nucleotide Protein
    Heading Accession and Version

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