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    MSC-AS1 MSC antisense RNA 1 [ Homo sapiens (human) ]

    Gene ID: 100132891, updated on 17-Sep-2024

    Summary

    Official Symbol
    MSC-AS1provided by HGNC
    Official Full Name
    MSC antisense RNA 1provided by HGNC
    Primary source
    HGNC:HGNC:48724
    See related
    Ensembl:ENSG00000235531 AllianceGenome:HGNC:48724
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    MAT1
    Expression
    Ubiquitous expression in urinary bladder (RPKM 4.5), gall bladder (RPKM 4.1) and 24 other tissues See more
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    Genomic context

    See MSC-AS1 in Genome Data Viewer
    Location:
    8q13.3-q21.11
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 8 NC_000008.11 (71843123..72056312)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 8 NC_060932.1 (72278328..72491399)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 8 NC_000008.10 (72755358..72968547)

    Chromosome 8 - NC_000008.11Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107986890 Neighboring gene U8 small nucleolar RNA Neighboring gene ATAC-STARR-seq lymphoblastoid active region 27517 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr8:72742776-72743975 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 27519 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 27520 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 27521 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:72753440-72754300 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 19278 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 19279 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 27522 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 27523 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 19280 Neighboring gene musculin Neighboring gene ATAC-STARR-seq lymphoblastoid active region 27524 Neighboring gene ribosomal protein S20 pseudogene 20 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 27525 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr8:72945660-72946859 Neighboring gene transient receptor potential cation channel subfamily A member 1 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:72987624-72988195 Neighboring gene uncharacterized LOC124901962 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr8:73064806-73065399 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 27526 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 27527 Neighboring gene transient receptor potential cation channel subfamily A member 2, pseudogene

    Genomic regions, transcripts, and products

    Expression

    • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?

    General gene information

    Markers

    Other Names

    • MSC-antisense-transcript 1

    Clone Names

    • FLJ53548

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_033651.1 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) represents use of an inferred alternate promoter and omits an exon, resulting in a shorter transcript compared to variant 1.
      Source sequence(s)
      AC016057, BF171746, BQ332273, DB161440
      Related
      ENST00000457356.9
    2. NR_033652.1 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) represents the longer transcript.
      Source sequence(s)
      AC016057, AK304427

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000008.11 Reference GRCh38.p14 Primary Assembly

      Range
      71843123..72056312
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060932.1 Alternate T2T-CHM13v2.0

      Range
      72278328..72491399
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)