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    ctdspl2a CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase like 2a [ Danio rerio (zebrafish) ]

    Gene ID: 558181, updated on 9-Dec-2024

    Summary

    Official Symbol
    ctdspl2aprovided by ZNC
    Official Full Name
    CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase like 2aprovided by ZNC
    Primary source
    ZFIN:ZDB-GENE-061013-647
    See related
    Ensembl:ENSDARG00000061587 AllianceGenome:ZFIN:ZDB-GENE-061013-647
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    zgc:154017
    Summary
    Predicted to enable phosphoprotein phosphatase activity. Orthologous to human CTDSPL2 (CTD small phosphatase like 2). [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
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    Genomic context

    See ctdspl2a in Genome Data Viewer
    Location:
    chromosome: 25
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 25 NC_007136.7 (32496755..32519415)
    105 previous assembly GRCz10 (GCF_000002035.5) 25 NC_007136.6 (32085798..32108458)

    Chromosome 25 - NC_007136.7Genomic Context describing neighboring genes Neighboring gene ATPase phospholipid transporting 8B4 Neighboring gene sulfide quinone oxidoreductase Neighboring gene S-phase cyclin A-associated protein in the ER Neighboring gene ISL LIM homeobox 2a

    Genomic regions, transcripts, and products

    Expression

    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Clone Names

    • MGC154017

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables hydrolase activity IEA
    Inferred from Electronic Annotation
    more info
     
    enables phosphatase activity IEA
    Inferred from Electronic Annotation
    more info
     
    enables phosphoprotein phosphatase activity IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    enables phosphoprotein phosphatase activity IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
     

    General protein information

    Preferred Names
    CTD small phosphatase-like protein 2-A
    Names
    CTDSP-like 2-A
    NP_001071012.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001077544.1NP_001071012.1  CTD small phosphatase-like protein 2-A

      See identical proteins and their annotated locations for NP_001071012.1

      Status: PROVISIONAL

      Source sequence(s)
      BC124794
      UniProtKB/Swiss-Prot
      Q08BB5
      Related
      ENSDARP00000082411.4, ENSDART00000087978.6
      Conserved Domains (1) summary
      TIGR02251
      Location:290445
      HIF-SF_euk; Dullard-like phosphatase domain

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007136.7 Reference GRCz11 Primary Assembly

      Range
      32496755..32519415
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)