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    slain2 SLAIN motif family, member 2 [ Danio rerio (zebrafish) ]

    Gene ID: 557946, updated on 9-Dec-2024

    Summary

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    Official Symbol
    slain2provided by ZNC
    Official Full Name
    SLAIN motif family, member 2provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-041014-251
    See related
    Ensembl:ENSDARG00000032114 AllianceGenome:ZFIN:ZDB-GENE-041014-251
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    si:dkey-90m5.3
    Summary
    Predicted to be involved in cytoplasmic microtubule organization; microtubule nucleation; and positive regulation of microtubule polymerization. Predicted to colocalize with microtubule plus-end. Orthologous to human SLAIN2 (SLAIN motif family member 2). [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    human mouse all
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    Genomic context

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    See slain2 in Genome Data Viewer
    Location:
    chromosome: 20
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 20 NC_007131.7 (23446347..23472337, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 20 NC_007131.6 (23547143..23573266, complement)

    Chromosome 20 - NC_007131.7Genomic Context describing neighboring genes Neighboring gene si:dkey-90m5.4 Neighboring gene solute carrier family 10 member 4 Neighboring gene zygote arrest 1 Neighboring gene anaphase promoting complex subunit 4 Neighboring gene palladin, cytoskeletal associated protein

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. Hematopoietic gene expression profile in zebrafish kidney marrow. Song HD, et al. Proc Natl Acad Sci U S A, 2004 Nov 16. PMID 15520368, Free PMC Article
    2. Evolution of complexity in the zebrafish synapse proteome. Bayés À, et al. Nat Commun, 2017 Mar 2. PMID 28252024, Free PMC Article
    3. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
    4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
    5. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    See all (6) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    SLAIN motif-containing protein 2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001044846.1 → NP_001038311.1  SLAIN motif-containing protein 2

      Status: PROVISIONAL

      Source sequence(s)
      BX537133
      UniProtKB/TrEMBL
      A0A8N7UY82, Q5RHE6
      Related
      ENSDARP00000108203.2, ENSDART00000123222.4
      Conserved Domains (1) summary
      pfam15301
      Location:154 → 567
      SLAIN; SLAIN motif-containing family

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007131.7 Reference GRCz11 Primary Assembly

      Range
      23446347..23472337 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_017352484.3 → XP_017207973.1  SLAIN motif-containing protein 2 isoform X3

      UniProtKB/TrEMBL
      A0A8M6Z398

    2. XM_017352483.3 → XP_017207972.1  SLAIN motif-containing protein 2 isoform X2

      UniProtKB/TrEMBL
      A0A8M6YWM6

    3. XM_009294668.4 → XP_009292943.1  SLAIN motif-containing protein 2 isoform X1

      UniProtKB/TrEMBL
      A0A8M3AW67
      Conserved Domains (1) summary
      pfam15301
      Location:154 → 607
      SLAIN; SLAIN motif-containing family
    Nucleotide Protein
    Heading Accession and Version

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