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    snap91b synaptosome associated protein 91b [ Danio rerio (zebrafish) ]

    Gene ID: 559029, updated on 27-Dec-2024

    Summary

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    Official Symbol
    snap91bprovided by ZNC
    Official Full Name
    synaptosome associated protein 91bprovided by ZNC
    Primary source
    ZFIN:ZDB-GENE-041210-81
    See related
    AllianceGenome:ZFIN:ZDB-GENE-041210-81
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    si:ch211-214j24.6; si:ch211-214j24.8; si:ch211-214j24.9
    Summary
    Predicted to enable 1-phosphatidylinositol binding activity and clathrin binding activity. Predicted to act upstream of or within clathrin coat assembly and clathrin-dependent endocytosis. Predicted to be located in clathrin-coated vesicle. Orthologous to human SNAP91 (synaptosome associated protein 91). [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    all
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    Genomic context

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    See snap91b in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    15
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 4 NC_007115.7 (5260255..5285076, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 4 NC_007115.6 (5251685..5294340, complement)

    Chromosome 4 - NC_007115.7Genomic Context describing neighboring genes Neighboring gene si:ch211-214j24.14 Neighboring gene coiled-coil domain containing 167 Neighboring gene uncharacterized LOC137491504 Neighboring gene clathrin coat assembly protein AP180 Neighboring gene clathrin coat assembly protein AP180-like Neighboring gene si:ch211-214j24.15

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. Phenotypic Landscape of Schizophrenia-Associated Genes Defines Candidates and Their Shared Functions. Thyme SB, et al. Cell, 2019 Apr 4. PMID 30929901, Free PMC Article
    2. 15000 unique zebrafish EST clusters and their future use in microarray for profiling gene expression patterns during embryogenesis. Lo J, et al. Genome Res, 2003 Mar. PMID 12618376, Free PMC Article
    3. Evolution of complexity in the zebrafish synapse proteome. Bayés À, et al. Nat Commun, 2017 Mar 2. PMID 28252024, Free PMC Article
    4. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article
    5. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables 1-phosphatidylinositol binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables clathrin binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables phospholipid binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within clathrin coat assembly IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within clathrin-dependent endocytosis IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in clathrin-coated vesicle IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    clathrin coat assembly protein AP180; uncharacterized protein LOC559029
    Names
    synaptosomal-associated protein 91b

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007115.7 Reference GRCz11 Primary Assembly

      Range
      5260255..5285076 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_068220724.1 → XP_068076825.1  clathrin coat assembly protein AP180 isoform X1

    2. XM_068220727.1 → XP_068076828.1  clathrin coat assembly protein AP180 isoform X4

    3. XM_068220725.1 → XP_068076826.1  clathrin coat assembly protein AP180 isoform X2

    4. XM_009300022.4 → XP_009298297.2  clathrin coat assembly protein AP180 isoform X1

    5. XM_682327.10 → XP_687419.6  clathrin coat assembly protein AP180 isoform X6

    6. XM_068220730.1 → XP_068076831.1  clathrin coat assembly protein AP180 isoform X7

    7. XM_068220729.1 → XP_068076830.1  clathrin coat assembly protein AP180 isoform X6

    8. XM_068220728.1 → XP_068076829.1  clathrin coat assembly protein AP180 isoform X5

    9. XM_068220726.1 → XP_068076827.1  clathrin coat assembly protein AP180 isoform X3

    Nucleotide Protein Strain
    Heading Accession and Version

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