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    ildr1a immunoglobulin-like domain containing receptor 1a [ Danio rerio (zebrafish) ]

    Gene ID: 393364, updated on 27-Dec-2024

    Summary

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    Official Symbol
    ildr1aprovided by ZNC
    Official Full Name
    immunoglobulin-like domain containing receptor 1aprovided by ZNC
    Primary source
    ZFIN:ZDB-GENE-040426-1412
    See related
    Ensembl:ENSDARG00000103929 AllianceGenome:ZFIN:ZDB-GENE-040426-1412
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    zgc:64227
    Summary
    Is expressed in EVL; ectoderm; and sensory system. Human ortholog(s) of this gene implicated in autosomal recessive nonsyndromic deafness 42. Orthologous to human ILDR1 (immunoglobulin like domain containing receptor 1). [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    all
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    Genomic context

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    See ildr1a in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 1 NC_007112.7 (44839..49831, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 1 NC_007112.6 (44839..49831, complement)

    Chromosome 1 - NC_007112.7Genomic Context describing neighboring genes Neighboring gene heat shock protein nuclear import factor hikeshi Neighboring gene transmembrane protein 39A Neighboring gene immunoglobulin-like domain-containing receptor 2 Neighboring gene glycoprotein A33 (transmembrane), paralog a

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. Loss-of-function mutations of ILDR1 cause autosomal-recessive hearing impairment DFNB42. Borck G, et al. Am J Hum Genet, 2011 Feb 11. PMID 21255762, Free PMC Article
    2. Ildr1b is essential for semicircular canal development, migration of the posterior lateral line primordium and hearing ability in zebrafish: implications for a role in the recessive hearing impairment DFNB42. Sang Q, et al. Hum Mol Genet, 2014 Dec 1. PMID 24990150
    3. Evolutionary context can clarify gene names: Teleosts as a case study. Gasanov EV, et al. Bioessays, 2021 Jun. PMID 33829511
    4. High-throughput gene targeting and phenotyping in zebrafish using CRISPR/Cas9. Varshney GK, et al. Genome Res, 2015 Jul. PMID 26048245, Free PMC Article
    5. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article

    See all (8) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Clone Names

    • MGC64227

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    immunoglobulin-like domain-containing receptor 1a

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_200393.1 → NP_956687.1  immunoglobulin-like domain-containing receptor 1a precursor

      See identical proteins and their annotated locations for NP_956687.1

      Status: PROVISIONAL

      Source sequence(s)
      BC053314
      Related
      ENSDARP00000130985.1, ENSDART00000168428.1

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007112.7 Reference GRCz11 Primary Assembly

      Range
      44839..49831 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

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