si:ch211-154o6.3 si:ch211-154o6.3 [Danio rerio (zebrafish)] - Gene

Summary

Official Symbol: si:ch211-154o6.3provided by ZNC
Official Full Name: si:ch211-154o6.3provided by ZNC
Primary source: ZFIN:ZDB-GENE-030131-1030
See related: Ensembl:ENSDARG00000099846 AllianceGenome:ZFIN:ZDB-GENE-030131-1030
Gene type: protein coding
RefSeq status: PREDICTED
Organism: Danio rerio
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as: fb57e01; wu:fb57e01; si:ch1073-327m5.1
Summary: Predicted to enable U3 snoRNA binding activity. [provided by Alliance of Genome Resources, Dec 2024]
Orthologs: all
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Genomic context

See si:ch211-154o6.3 in Genome Data Viewer

Location:: chromosome: 16

Exon count:: 13

Annotation release	Status	Assembly	Chr	Location
RS_2024_08	current	GRCz11 (GCF_000002035.6)	16	NC_007127.7 (21698990..21737757)
105	previous assembly	GRCz10 (GCF_000002035.5)	16	NC_007127.6 (21894738..21933505)

Chromosome 16 - NC_007127.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Expression

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See details

Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
BioProject: PRJEB1986
Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Markers

G39317 (e-PCR)
- UniSTS:34561

fi71f02.x1 (e-PCR)
- UniSTS:197903

fb57e01.x1 (e-PCR)
- UniSTS:190772

fb57e01 (e-PCR)
- UniSTS:187230

Gene Ontology Provided by ZFIN

Function	Evidence Code	Pubs
enables U3 snoRNA binding	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: uncharacterized protein LOC563854

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001045031.1 → NP_001038496.1 uncharacterized protein LOC563854

See identical proteins and their annotated locations for NP_001038496.1

Status: PREDICTED

Source sequence(s)

BX294670

UniProtKB/TrEMBL

Q1LXQ1

Related

ENSDARP00000145171.1, ENSDART00000181036.1

Conserved Domains (3) summary

COG2319
Location:136 → 378

WD40; WD40 repeat [General function prediction only]

sd00039
Location:147 → 181

7WD40; WD40 repeat [structural motif]

cl02567
Location:137 → 315

WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...