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    ubn2b ubinuclein 2b [ Danio rerio (zebrafish) ]

    Gene ID: 561642, updated on 2-Nov-2024

    Summary

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    Official Symbol
    ubn2bprovided by ZNC
    Official Full Name
    ubinuclein 2bprovided by ZNC
    Primary source
    ZFIN:ZDB-GENE-060503-768
    See related
    Ensembl:ENSDARG00000100508 AllianceGenome:ZFIN:ZDB-GENE-060503-768
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    si:ch211-175l6.9
    Summary
    Predicted to be involved in chromatin organization. Predicted to be active in nucleus. Orthologous to human UBN2 (ubinuclein 2). [provided by Alliance of Genome Resources, Nov 2024]
    Orthologs
    all
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    Genomic context

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    See ubn2b in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    15
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 3 NC_007114.7 (7839880..7897271, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 3 NC_007114.6 (7954040..8011447, complement)

    Chromosome 3 - NC_007114.7Genomic Context describing neighboring genes Neighboring gene JunB proto-oncogene, AP-1 transcription factor subunit b Neighboring gene hook microtubule-tethering protein 2 Neighboring gene telomerase RNA component interacting RNase Neighboring gene uncharacterized LOC110439335 Neighboring gene tripartite motif containing 35-21 Neighboring gene uncharacterized LOC110439334 Neighboring gene tripartite motif containing 35-25

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
    2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article
    3. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by ZFIN

    Process Evidence Code Pubs
    involved_in chromatin organization IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Component Evidence Code Pubs
    is_active_in nucleus IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    ubinuclein-2b

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001104940.1 → NP_001098410.1  ubinuclein-2b

      See identical proteins and their annotated locations for NP_001098410.1

      Status: PROVISIONAL

      Source sequence(s)
      BC152496
      UniProtKB/TrEMBL
      A0A8M1NEJ6, A7MD64
      Related
      ENSDARP00000140343.1, ENSDART00000169757.2
      Conserved Domains (2) summary
      pfam08729
      Location:140 → 189
      HUN; HPC2 and ubinuclein domain
      pfam14075
      Location:389 → 588
      UBN_AB; Ubinuclein conserved middle domain

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007114.7 Reference GRCz11 Primary Assembly

      Range
      7839880..7897271 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_005164318.4 → XP_005164375.1  ubinuclein-2b isoform X1

      UniProtKB/TrEMBL
      A0A2R8PZN3, A0A8M2BBI3
      Related
      ENSDARP00000146730.1, ENSDART00000185232.1
      Conserved Domains (2) summary
      pfam08729
      Location:140 → 189
      HUN; HPC2 and ubinuclein domain
      pfam14075
      Location:389 → 588
      UBN_AB; Ubinuclein conserved middle domain

    Reference GRCz11 ALT_DRER_TU_1

    Genomic

    1. NW_018394518.1 Reference GRCz11 ALT_DRER_TU_1

      Range
      3363..42482 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version

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