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    zgc:113208 zgc:113208 [ Danio rerio (zebrafish) ]

    Gene ID: 550591, updated on 12-Sep-2024

    Summary

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    Official Symbol
    zgc:113208provided by ZNC
    Official Full Name
    zgc:113208provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-050417-450
    See related
    Ensembl:ENSDARG00000035610 AllianceGenome:ZFIN:ZDB-GENE-050417-450
    Gene type
    protein coding
    RefSeq status
    PREDICTED
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    wu:fb94c06; wu:fe14c09
    Orthologs
    all
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    Genomic context

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    See zgc:113208 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 5 NC_007116.7 (22605847..22621436, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 5 NC_007116.6 (22102047..22117664, complement)

    Chromosome 5 - NC_007116.7Genomic Context describing neighboring genes Neighboring gene caspase 22, apoptosis-related cysteine peptidase Neighboring gene non-POU domain containing, octamer-binding Neighboring gene melatonin receptor 1C Neighboring gene vacuolar ATPase assembly factor VMA21

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. Rapid identification and isolation of zebrafish cDNA clones. Gong Z, et al. Gene, 1997 Nov 12. PMID 9409775
    2. Functional Characterization and Expression Analyses Show Differential Roles of Maternal and Zygotic Dgcr8 in Early Embryonic Development. Zhu Z, et al. Front Genet, 2020. PMID 32296464, Free PMC Article
    3. 15000 unique zebrafish EST clusters and their future use in microarray for profiling gene expression patterns during embryogenesis. Lo J, et al. Genome Res, 2003 Mar. PMID 12618376, Free PMC Article
    4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
    5. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    uncharacterized protein LOC550591

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001017892.1 → NP_001017892.1  uncharacterized protein LOC550591

      See identical proteins and their annotated locations for NP_001017892.1

      Status: PREDICTED

      Source sequence(s)
      BC093435
      UniProtKB/TrEMBL
      A0A8M1N5U4, Q566N6
      Related
      ENSDARP00000051622.3, ENSDART00000051623.5

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007116.7 Reference GRCz11 Primary Assembly

      Range
      22605847..22621436 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_068221174.1 → XP_068077275.1  uncharacterized protein LOC550591 isoform X1

    2. XM_068221175.1 → XP_068077276.1  uncharacterized protein LOC550591 isoform X2

    Reference GRCz11 ALT_DRER_TU_1

    Genomic

    1. NW_018394573.1 Reference GRCz11 ALT_DRER_TU_1

      Range
      125964..141817 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version

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