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    lyplal1 lysophospholipase like 1 [ Danio rerio (zebrafish) ]

    Gene ID: 503751, updated on 9-Dec-2024

    Summary

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    Official Symbol
    lyplal1provided by ZNC
    Official Full Name
    lysophospholipase like 1provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-050306-32
    See related
    Ensembl:ENSDARG00000088764 AllianceGenome:ZFIN:ZDB-GENE-050306-32
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    zgc:110848; si:dkey-275d24.1
    Summary
    Predicted to enable carboxylic ester hydrolase activity and palmitoyl-(protein) hydrolase activity. Predicted to be involved in protein depalmitoylation. Predicted to be active in cytoplasm. Orthologous to human LYPLAL1 (lysophospholipase like 1). [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    human mouse all
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    Genomic context

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    See lyplal1 in Genome Data Viewer
    Location:
    chromosome: 16
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 16 NC_007127.7 (2622643..2650341, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 16 NC_007127.6 (2399818..2412683, complement)

    Chromosome 16 - NC_007127.7Genomic Context describing neighboring genes Neighboring gene adenylate cyclase 3a Neighboring gene prolactin regulatory element binding Neighboring gene transforming growth factor, beta 2 Neighboring gene acyl-CoA thioesterase 22

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
    2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
    3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables hydrolase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables palmitoyl-(protein) hydrolase activity IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    lysophospholipase-like protein 1
    NP_001013347.1
    XP_017206834.2
    XP_068070058.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001013329.1 → NP_001013347.1  lysophospholipase-like protein 1

      See identical proteins and their annotated locations for NP_001013347.1

      Status: PROVISIONAL

      Source sequence(s)
      BC090793
      UniProtKB/TrEMBL
      A0A8M6YV78, Q5CZM6
      Related
      ENSDARP00000106126.1, ENSDART00000128169.2
      Conserved Domains (1) summary
      cl21494
      Location:9 → 222
      Abhydrolase; alpha/beta hydrolases

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007127.7 Reference GRCz11 Primary Assembly

      Range
      2622643..2650341 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_068213957.1 → XP_068070058.1  lysophospholipase-like protein 1 isoform X2

    2. XM_017351345.3 → XP_017206834.2  lysophospholipase-like protein 1 isoform X1

      UniProtKB/TrEMBL
      A0A8M6YV78

    RNA

    1. XR_011006570.1 RNA Sequence

    2. XR_011006569.1 RNA Sequence

    Nucleotide Protein Strain
    Heading Accession and Version

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