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    ncdn neurochondrin [ Danio rerio (zebrafish) ]

    Gene ID: 571005, updated on 9-Dec-2024

    Summary

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    Official Symbol
    ncdnprovided by ZNC
    Official Full Name
    neurochondrinprovided by ZNC
    Primary source
    ZFIN:ZDB-GENE-061220-6
    See related
    Ensembl:ENSDARG00000098544 AllianceGenome:ZFIN:ZDB-GENE-061220-6
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Summary
    Predicted to be involved in neuron projection development and regulation of neuronal synaptic plasticity. Predicted to be active in dendrite. Orthologous to human NCDN (neurochondrin). [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    human mouse all
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    Genomic context

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    See ncdn in Genome Data Viewer
    Location:
    chromosome: 19
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 19 NC_007130.7 (47460664..47476381, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 19 NC_007130.6 (47902320..47918189, complement)

    Chromosome 19 - NC_007130.7Genomic Context describing neighboring genes Neighboring gene proteasome 20S subunit beta 2 Neighboring gene transcription factor AP-2 epsilon Neighboring gene zgc:114119 Neighboring gene exostoses (multiple) 1c

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article
    2. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by ZFIN

    Process Evidence Code Pubs
    involved_in neuron projection development IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    involved_in regulation of neuronal synaptic plasticity IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Component Evidence Code Pubs
    is_active_in dendrite IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    neurochondrin

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007130.7 Reference GRCz11 Primary Assembly

      Range
      47460664..47476381 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_002667083.4 → XP_002667129.1  neurochondrin

      UniProtKB/TrEMBL
      A0A0R4ILN3, A0A8M1RMX7
      Related
      ENSDARP00000134745.1, ENSDART00000165688.3
      Conserved Domains (1) summary
      pfam05536
      Location:27 → 579
      Neurochondrin; Neurochondrin
    Nucleotide Protein
    Heading Accession and Version

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