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    LOC560947 putative mediator of RNA polymerase II transcription subunit 26 [ Danio rerio (zebrafish) ]

    Gene ID: 560947, updated on 17-Sep-2024

    Summary

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    Gene symbol
    LOC560947
    Gene description
    putative mediator of RNA polymerase II transcription subunit 26
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Orthologs
    all
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    Genomic context

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    See LOC560947 in Genome Data Viewer
    Location:
    chromosome: 24
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 24 NC_007135.7 (7551838..7557850)
    105 previous assembly GRCz10 (GCF_000002035.5) 24 NC_007135.6 (7522614..7528531)

    Chromosome 24 - NC_007135.7Genomic Context describing neighboring genes Neighboring gene actin related protein 3B Neighboring gene X-ray repair complementing defective repair in Chinese hamster cells 2 Neighboring gene lysine (K)-specific methyltransferase 2Ca Neighboring gene UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 11 (GalNAc-T11) Neighboring gene ATPase H+ transporting V0 subunit a1b

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    involucrin; putative mediator of RNA polymerase II transcription subunit 26

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007135.7 Reference GRCz11 Primary Assembly

      Range
      7551838..7557850
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_068217151.1 → XP_068073252.1  putative mediator of RNA polymerase II transcription subunit 26 isoform X4

    2. XM_005162550.5 → XP_005162607.1  putative mediator of RNA polymerase II transcription subunit 26 isoform X3

      UniProtKB/TrEMBL
      A0A8M2B9K5
      Conserved Domains (1) summary
      TIGR03835
      Location:45 → 288
      termin_org_DnaJ; terminal organelle assembly protein TopJ

    3. XM_068217152.1 → XP_068073253.1  involucrin isoform X5

    4. XM_068217150.1 → XP_068073251.1  putative mediator of RNA polymerase II transcription subunit 26 isoform X2

    5. XM_009297273.4 → XP_009295548.1  putative mediator of RNA polymerase II transcription subunit 26 isoform X1

      UniProtKB/TrEMBL
      A0A8M3AP38
      Conserved Domains (1) summary
      PRK14950
      Location:15 → 213
      PRK14950; DNA polymerase III subunits gamma and tau; Provisional
    Nucleotide Protein
    Heading Accession and Version

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