ccl34b.1 chemokine (C-C motif) ligand 34b, duplicate 1 [Danio rerio (zebrafish)] - Gene

Summary

Official Symbol: ccl34b.1provided by ZNC
Official Full Name: chemokine (C-C motif) ligand 34b, duplicate 1provided by ZNC
Primary source: ZFIN:ZDB-GENE-091204-276
See related: Ensembl:ENSDARG00000093608 AllianceGenome:ZFIN:ZDB-GENE-091204-276
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Danio rerio
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as: si:dkey-25o1.6
Summary: Predicted to enable CCR chemokine receptor binding activity and chemokine activity. Predicted to be involved in several processes, including antimicrobial humoral immune response mediated by antimicrobial peptide; cell chemotaxis; and chemokine-mediated signaling pathway. Predicted to act upstream of or within immune response. Predicted to be located in extracellular region. Predicted to be active in extracellular space. [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

Location:: chromosome: 24

Exon count:: 4

Annotation release	Status	Assembly	Chr	Location
RS_2024_08	current	GRCz11 (GCF_000002035.6)	24	NC_007135.7 (27397356..27400022, complement)
105	previous assembly	GRCz10 (GCF_000002035.5)	24	NC_007135.6 (27318197..27320859, complement)

Chromosome 24 - NC_007135.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Expression

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See details

Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
BioProject: PRJEB1986
Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Gene Ontology Provided by ZFIN

Function	Evidence Code	Pubs
enables chemokine activity	IEA Inferred from Electronic Annotation more info
enables cytokine activity	IEA Inferred from Electronic Annotation more info

Process	Evidence Code	Pubs
acts_upstream_of_or_within immune response	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
located_in extracellular region	IEA Inferred from Electronic Annotation more info
located_in extracellular space	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: chemokine (C-C motif) ligand 34b, duplicate 1

Names: CCL-chr24m; CCL34ba; Dr22_WGA1631_1_283786; chemokine CCL-C24m

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001115054.2 → NP_001108526.2 chemokine (C-C motif) ligand 34b, duplicate 1 precursor

Status: VALIDATED

Source sequence(s)

CR383669, EH445745

UniProtKB/TrEMBL

A0A0R4IPJ5, A0A8N1TQT2

Related

ENSDARP00000136441.1, ENSDART00000165760.3

Conserved Domains (1) summary

cl00134
Location:33 → 84

Chemokine; Chemokine: small cytokines, including a number of secreted growth factors and interferons involved in mitogenic, chemotactic, and inflammatory activity; distinguished from other cytokines by their receptors, which are G-protein coupled receptors; divided ...

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

NC_007135.7 Reference GRCz11 Primary Assembly

Range

27397356..27400022 complement

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_021470202.2 → XP_021325877.1 chemokine (C-C motif) ligand 34b, duplicate 1 isoform X1

UniProtKB/TrEMBL

A0A8M9P5Y4

Related

ENSDARP00000116086.1, ENSDART00000145829.2

Conserved Domains (1) summary

cl00134
Location:32 → 83

Chemokine; Chemokine: small cytokines, including a number of secreted growth factors and interferons involved in mitogenic, chemotactic, and inflammatory activity; distinguished from other cytokines by their receptors, which are G-protein coupled receptors; divided ...