zc3h7a zinc finger CCCH-type containing 7A [Danio rerio (zebrafish)] - Gene

Summary

Official Symbol: zc3h7aprovided by ZNC
Official Full Name: zinc finger CCCH-type containing 7Aprovided by ZNC
Primary source: ZFIN:ZDB-GENE-040426-2776
See related: Ensembl:ENSDARG00000102195 AllianceGenome:ZFIN:ZDB-GENE-040426-2776
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Danio rerio
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as: zc3h7; fa12e01; fc07f05; fc38e12; fc55c11; zgc:55684; wu:fa12e01; wu:fc07f05; wu:fc38e12; wu:fc55c11
Summary: Predicted to enable miRNA binding activity. Predicted to be involved in miRNA processing. Orthologous to human ZC3H7A (zinc finger CCCH-type containing 7A). [provided by Alliance of Genome Resources, Dec 2024]
Orthologs: human mouse all
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Genomic context

Location:: chromosome: 3

Exon count:: 23

Annotation release	Status	Assembly	Chr	Location
RS_2024_08	current	GRCz11 (GCF_000002035.6)	3	NC_007114.7 (43774369..43808322)
105	previous assembly	GRCz10 (GCF_000002035.5)	3	NC_007114.6 (43073452..43107405)

Chromosome 3 - NC_007114.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Expression

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See details

Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
BioProject: PRJEB1986
Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Markers

fa12e01.s1 (e-PCR)
- UniSTS:202344

fc55c11 (e-PCR)
- UniSTS:189352

fc38e12.x1 (e-PCR)
- UniSTS:188094

aa494777 (e-PCR)
- UniSTS:186816

Gene Ontology Provided by ZFIN

Function	Evidence Code	Pubs
enables metal ion binding	IEA Inferred from Electronic Annotation more info
enables miRNA binding	IBA Inferred from Biological aspect of Ancestor more info
enables miRNA binding	IEA Inferred from Electronic Annotation more info

Process	Evidence Code	Pubs
involved_in miRNA processing	IBA Inferred from Biological aspect of Ancestor more info

General protein information

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Preferred Names: zinc finger CCCH domain-containing protein 7A

Names: zinc finger CCCH-type containing 7

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_213434.1 → NP_998599.1 zinc finger CCCH domain-containing protein 7A

See identical proteins and their annotated locations for NP_998599.1

Status: PROVISIONAL

Source sequence(s)

BC048884

UniProtKB/TrEMBL

Q7ZUL0

Related

ENSDARP00000141738.1, ENSDART00000157964.2

Conserved Domains (7) summary

sd00020
Location:871 → 893

ZF_C2H2; C2H2 Zn finger [structural motif]

sd00006
Location:46 → 71

TPR; TPR repeat [structural motif]

pfam00515
Location:90 → 122

TPR_1; Tetratricopeptide repeat

pfam12171
Location:871 → 894

zf-C2H2_jaz; Zinc-finger double-stranded RNA-binding

pfam13414
Location:44 → 120

TPR_11; TPR repeat

pfam13431
Location:112 → 142

TPR_17; Tetratricopeptide repeat

pfam14559
Location:105 → 166

TPR_19; Tetratricopeptide repeat