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    si:ch73-347e22.8 si:ch73-347e22.8 [ Danio rerio (zebrafish) ]

    Gene ID: 100000389, updated on 12-Sep-2024

    Summary

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    Official Symbol
    si:ch73-347e22.8provided by ZNC
    Official Full Name
    si:ch73-347e22.8provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-030131-8455
    See related
    Ensembl:ENSDARG00000103322 AllianceGenome:ZFIN:ZDB-GENE-030131-8455
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    fb12c09; wu:fb12c09
    Orthologs
    all
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    Genomic context

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    See si:ch73-347e22.8 in Genome Data Viewer
    Location:
    chromosome: 19
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 19 NC_007130.7 (10938358..10950782)
    105 previous assembly GRCz10 (GCF_000002035.5) 19 NC_007130.6 (11019012..11031857)

    Chromosome 19 - NC_007130.7Genomic Context describing neighboring genes Neighboring gene extracellular matrix protein 1a Neighboring gene uncharacterized LOC137488479 Neighboring gene cytosolic phospholipase A2 gamma Neighboring gene microseminoprotein, prostate associated 2

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. Protein Arginine Methyltransferase 6 (Prmt6) Is Essential for Early Zebrafish Development through the Direct Suppression of gadd45αa Stress Sensor Gene. Zhao XX, et al. J Biol Chem, 2016 Jan 1. PMID 26487724, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    General protein information

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    Preferred Names
    tropomyosin

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007130.7 Reference GRCz11 Primary Assembly

      Range
      10938358..10950782
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_005173759.5 → XP_005173816.1  tropomyosin

      UniProtKB/TrEMBL
      A0A0R4ICP4, A0A8M2BL41
      Related
      ENSDARP00000132773.1, ENSDART00000168968.2
      Conserved Domains (1) summary
      TIGR04527
      Location:12 → 137
      mycoplas_twoTM; two transmembrane protein
    Nucleotide Protein Strain
    Heading Accession and Version

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