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    borcs6 BLOC-1 related complex subunit 6 [ Danio rerio (zebrafish) ]

    Gene ID: 562545, updated on 9-Dec-2024

    Summary

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    Official Symbol
    borcs6provided by ZNC
    Official Full Name
    BLOC-1 related complex subunit 6provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-060531-151
    See related
    Ensembl:ENSDARG00000061023 AllianceGenome:ZFIN:ZDB-GENE-060531-151
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    si:dkey-72l14.4
    Summary
    Predicted to be involved in lysosome localization. Predicted to be part of BORC complex. Orthologous to human BORCS6 (BLOC-1 related complex subunit 6). [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    human mouse all
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    Genomic context

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    See borcs6 in Genome Data Viewer
    Location:
    chromosome: 8
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 8 NC_007119.7 (25959926..25971560)
    105 previous assembly GRCz10 (GCF_000002035.5) 8 NC_007119.6 (25940763..25952421)

    Chromosome 8 - NC_007119.7Genomic Context describing neighboring genes Neighboring gene ras homolog gene family, member Ab Neighboring gene sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3H Neighboring gene si:dkey-72l14.3 Neighboring gene microRNA 135b

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. Hematopoietic gene expression profile in zebrafish kidney marrow. Song HD, et al. Proc Natl Acad Sci U S A, 2004 Nov 16. PMID 15520368, Free PMC Article
    2. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
    3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
    4. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article
    5. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by ZFIN

    Process Evidence Code Pubs
    involved_in lysosome localization IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Component Evidence Code Pubs
    part_of BORC complex IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    BLOC-1-related complex subunit 6

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001044988.1 → NP_001038453.1  BLOC-1-related complex subunit 6

      See identical proteins and their annotated locations for NP_001038453.1

      Status: PROVISIONAL

      Source sequence(s)
      BX784025
      UniProtKB/TrEMBL
      A0A8N7UY96, Q1LVE2
      Related
      ENSDARP00000122695.1, ENSDART00000140626.3
      Conserved Domains (1) summary
      pfam10157
      Location:285 → 433
      DUF2365; Uncharacterized conserved protein (DUF2365)

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007119.7 Reference GRCz11 Primary Assembly

      Range
      25959926..25971560
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_005167044.4 → XP_005167101.1  BLOC-1-related complex subunit 6 isoform X1

      See identical proteins and their annotated locations for XP_005167101.1

      UniProtKB/TrEMBL
      A0A8N7UY96, Q1LVE2
      Related
      ENSDARP00000116829.1, ENSDART00000143011.3
      Conserved Domains (1) summary
      pfam10157
      Location:285 → 433
      DUF2365; Uncharacterized conserved protein (DUF2365)

    RNA

    1. XR_011016487.1 RNA Sequence

    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

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