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    LINC00880 long intergenic non-protein coding RNA 880 [ Homo sapiens (human) ]

    Gene ID: 339894, updated on 17-Sep-2024

    Summary

    Official Symbol
    LINC00880provided by HGNC
    Official Full Name
    long intergenic non-protein coding RNA 880provided by HGNC
    Primary source
    HGNC:HGNC:27948
    See related
    Ensembl:ENSG00000243629 AllianceGenome:HGNC:27948
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Biased expression in testis (RPKM 2.2), lymph node (RPKM 0.4) and 1 other tissue See more
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    Genomic context

    See LINC00880 in Genome Data Viewer
    Location:
    3q25.31
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 3 NC_000003.12 (157081667..157123002, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 3 NC_060927.1 (159856205..159897543, complement)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 3 NC_000003.11 (156799456..156840791, complement)

    Chromosome 3 - NC_000003.12Genomic Context describing neighboring genes Neighboring gene leucine, glutamate and lysine rich 1 Neighboring gene CRADD pseudogene 1 Neighboring gene RN7SK pseudogene 177 Neighboring gene ReSE screen-validated silencer GRCh37_chr3:156760074-156760241 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 14842 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 20735 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 14843 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 20736 Neighboring gene long intergenic non-protein coding RNA 2029 Neighboring gene long intergenic non-protein coding RNA 881 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 20737 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr3:156845958-156847157 Neighboring gene Sharpr-MPRA regulatory region 13439 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 14844 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 20739 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 14845 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr3:156877851-156878580 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 20740 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 20741 Neighboring gene keratin 18 pseudogene 34 Neighboring gene cyclin L1

    Genomic regions, transcripts, and products

    Expression

    • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Phenotypes

    EBI GWAS Catalog

    Description
    Genome-wide association analysis of eating disorder-related symptoms, behaviors, and personality traits.
    EBI GWAS Catalog

    General gene information

    Markers

    Clone Names

    • FLJ18260

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_034007.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC117392, AK311218, BC040669
      Related
      ENST00000471357.1

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000003.12 Reference GRCh38.p14 Primary Assembly

      Range
      157081667..157123002 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060927.1 Alternate T2T-CHM13v2.0

      Range
      159856205..159897543 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)