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    tmem184ba transmembrane protein 184ba [ Danio rerio (zebrafish) ]

    Gene ID: 550413, updated on 14-Nov-2024

    Summary

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    Official Symbol
    tmem184baprovided by ZNC
    Official Full Name
    transmembrane protein 184baprovided by ZNC
    Primary source
    ZFIN:ZDB-GENE-050417-219
    See related
    Ensembl:ENSDARG00000045147 AllianceGenome:ZFIN:ZDB-GENE-050417-219
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    zgc:112178
    Summary
    Predicted to enable transmembrane transporter activity. Predicted to be active in membrane. Orthologous to human TMEM184B (transmembrane protein 184B). [provided by Alliance of Genome Resources, Nov 2024]
    Orthologs
    human mouse all
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    Genomic context

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    See tmem184ba in Genome Data Viewer
    Location:
    chromosome: 12
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 12 NC_007123.7 (19320636..19340221)
    105 previous assembly GRCz10 (GCF_000002035.5) 12 NC_007123.6 (19198762..19218347)

    Chromosome 12 - NC_007123.7Genomic Context describing neighboring genes Neighboring gene si:ch211-141o9.10 Neighboring gene trinucleotide repeat containing adaptor 6Ba Neighboring gene casein kinase 1, epsilon Neighboring gene v-maf avian musculoaponeurotic fibrosarcoma oncogene homolog F Neighboring gene translocase of outer mitochondrial membrane 22 homolog (yeast)

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. 15000 unique zebrafish EST clusters and their future use in microarray for profiling gene expression patterns during embryogenesis. Lo J, et al. Genome Res, 2003 Mar. PMID 12618376, Free PMC Article
    2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
    3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by ZFIN

    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    transmembrane protein 184ba

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001017718.2 → NP_001017718.2  transmembrane protein 184ba

      Status: VALIDATED

      Source sequence(s)
      BX649366
      UniProtKB/TrEMBL
      A0A8M1N5I3, F1QSM8
      Related
      ENSDARP00000090847.4, ENSDART00000100075.6
      Conserved Domains (1) summary
      pfam03619
      Location:59 → 330
      Solute_trans_a; Organic solute transporter Ostalpha

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007123.7 Reference GRCz11 Primary Assembly

      Range
      19320636..19340221
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_005156144.5 → XP_005156201.1  transmembrane protein 184ba isoform X1

      UniProtKB/TrEMBL
      A0A8M2B2T9
      Conserved Domains (1) summary
      pfam03619
      Location:60 → 331
      Solute_trans_a; Organic solute transporter Ostalpha

    2. XM_005156146.5 → XP_005156203.1  transmembrane protein 184ba isoform X3

      UniProtKB/TrEMBL
      A0A8M2B262
      Related
      ENSDARP00000066388.5, ENSDART00000066389.5
      Conserved Domains (1) summary
      pfam03619
      Location:60 → 331
      Solute_trans_a; Organic solute transporter Ostalpha

    3. XM_005156145.4 → XP_005156202.1  transmembrane protein 184ba isoform X2

      UniProtKB/TrEMBL
      A0A8M2B280
      Conserved Domains (1) summary
      pfam03619
      Location:59 → 330
      Solute_trans_a; Organic solute transporter Ostalpha

    RNA

    1. XR_011017334.1 RNA Sequence

    2. XR_011017335.1 RNA Sequence

    Reference GRCz11 ALT_DRER_TU_2

    Genomic

    1. NW_018395301.1 Reference GRCz11 ALT_DRER_TU_2

      Range
      556489..576073
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version

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