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    LOC4337958 probable cellulose synthase A catalytic subunit 1 [UDP-forming] [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4337958, updated on 16-Jul-2024

    Summary

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    Gene symbol
    LOC4337958
    Gene description
    probable cellulose synthase A catalytic subunit 1 [UDP-forming]
    Locus tag
    OSNPB_050176100
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    CESA1; OsCesA1; OsJ_17310; OsJ_016545
    Expression
    Biased expression in flowers (RPKM 132.1), flower buds (RPKM 67.3) and 3 other tissues See more
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    Genomic context

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    See LOC4337958 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    14
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 5 NC_089039.1 (4584209..4590494, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 5 NC_029260.1 (4565274..4571456, complement)

    Chromosome 5 - NC_089039.1Genomic Context describing neighboring genes Neighboring gene rRNA 2'-O-methyltransferase fibrillarin 1 Neighboring gene small nucleolar RNA snoR60 Neighboring gene small nucleolar RNA snoR60 Neighboring gene MAPK kinase substrate protein Neighboring gene zinc finger CCCH domain-containing protein 34-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Molecular analysis of cellulose biosynthesis in Arabidopsis. Arioli T, et al. Science, 1998 Jan 30. PMID 9445479
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables cellulose synthase (UDP-forming) activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in cellulose biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in plant-type primary cell wall biogenesis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in trans-Golgi network IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    probable cellulose synthase A catalytic subunit 1 [UDP-forming]
    Names
    LOC_Os05g08370
    OSJNBa0029B02.3
    P0617A08.14
    RSW1-like cellulose synthase catalytic subunit
    NP_001389430.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001402501.1 → NP_001389430.1  probable cellulose synthase A catalytic subunit 1 [UDP-forming]

      Status: VALIDATED

      Source sequence(s)
      AK067850, AK067967, CI533254, CI591644, CI635021, CI754010
      UniProtKB/Swiss-Prot
      A2Y0X2, B7EE90, O48961, Q6AT26

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089039.1 Reference ASM3414082v1 Primary Assembly

      Range
      4584209..4590494 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q6AT26.1 GenPept UniProtKB/Swiss-Prot:Q6AT26

    Gene LinkOut

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    Research Materials