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    LOC4325103 ribonuclease 2 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4325103, updated on 12-Jul-2024

    Summary

    Gene symbol
    LOC4325103
    Gene description
    ribonuclease 2
    Locus tag
    OSNPB_010897200
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    P0506A10.1
    Expression
    Ubiquitous expression in roots before flowering (RPKM 42.6), leaves after flowering (RPKM 34.4) and 6 other tissues See more
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    Genomic context

    See LOC4325103 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (39622531..39625364, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (38990887..38993814, complement)

    Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene cyclin-dependent kinase B1-1-like Neighboring gene uncharacterized LOC4325102 Neighboring gene ribonuclease 2 Neighboring gene uncharacterized LOC136356425 Neighboring gene small ribosomal subunit protein mS80 (rPPR6)

    Genomic regions, transcripts, and products

    Expression

    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    General gene information

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    PubMed 
    enables ribonuclease T2 activity IEA
    Inferred from Electronic Annotation
    more info
    PubMed 
    Process Evidence Code Pubs
    involved_in RNA catabolic process IEA
    Inferred from Electronic Annotation
    more info
    PubMed 
    Component Evidence Code Pubs
    located_in extracellular region IEA
    Inferred from Electronic Annotation
    more info
    PubMed 

    General protein information

    Preferred Names
    ribonuclease 2
    Names
    Os01g0897200
    P0674H09.18
    putative S-like RNase

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

      Range
      39622531..39625364 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015794703.3XP_015650189.1  ribonuclease 2

      UniProtKB/TrEMBL
      B7E6H2, B9EVC6, Q5N865, Q5N8M9
      Conserved Domains (1) summary
      pfam00445
      Location:47233
      Ribonuclease_T2; Ribonuclease T2 family