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    LOC4351317 non-specific lipid-transfer protein 2B-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4351317, updated on 16-Jul-2024

    Summary

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    Gene symbol
    LOC4351317
    Gene description
    non-specific lipid-transfer protein 2B-like
    Locus tag
    OSNPB_120115000
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    LTP2-B; LTPB-1; OsJ_033643
    Expression
    Biased expression in flowers (RPKM 193.8), flower buds (RPKM 145.0) and 1 other tissue See more
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    Genomic context

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    See LOC4351317 in Genome Data Viewer
    Location:
    chromosome: 12
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 12 NC_089046.1 (756825..758061)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 12 NC_029267.1 (732984..734095)

    Chromosome 12 - NC_089046.1Genomic Context describing neighboring genes Neighboring gene non-specific lipid-transfer protein 4-like Neighboring gene non-specific lipid-transfer protein 3-like Neighboring gene non-specific lipid-transfer protein 1-like Neighboring gene non-specific lipid-transfer protein 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Rice lipid transfer protein (LTP) genes belong to a complex multigene family and are differentially regulated. Vignols F, et al. Gene, 1997 Aug 22. PMID 9305762
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables lipid binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in lipid transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    non-specific lipid-transfer protein 2B
    Names
    LOC_Os12g02310
    LTP 2B
    Ltp b1
    lipid transfer protein 2B

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001404634.1 → NP_001391563.1  non-specific lipid-transfer protein 2B precursor

      Status: VALIDATED

      Source sequence(s)
      AK107447, CI040320, CI252018
      UniProtKB/Swiss-Prot
      Q0IQL0, Q2QYL2
      UniProtKB/TrEMBL
      A0A0P0Y6A6, A0A1L2JIE5, V5K4S5

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089046.1 Reference ASM3414082v1 Primary Assembly

      Range
      756825..758061
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q2QYL2.1 GenPept UniProtKB/Swiss-Prot:Q2QYL2

    Gene LinkOut

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