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    LOC4332413 heat shock cognate 70 kDa protein 2 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4332413, updated on 17-Jul-2024

    Summary

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    Gene symbol
    LOC4332413
    Gene description
    heat shock cognate 70 kDa protein 2
    Locus tag
    OSNPB_030276500
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4332413 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 3 NC_089037.1 (9420603..9423511)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (9370145..9373068)

    Chromosome 3 - NC_089037.1Genomic Context describing neighboring genes Neighboring gene protein spotted leaf 11 Neighboring gene dof zinc finger protein DOF5.1 Neighboring gene uncharacterized LOC4332414 Neighboring gene uncharacterized LOC112938227

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ATP-dependent protein folding chaperone IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    heat shock cognate 70 kDa protein 2
    Names
    70 kDa heat shock protein
    Os03g0276500

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089037.1 Reference ASM3414082v1 Primary Assembly

      Range
      9420603..9423511
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015775052.2 → XP_015630538.1  heat shock cognate 70 kDa protein 2

      UniProtKB/TrEMBL
      A3AGK4, Q10NA9, Q40693
      Conserved Domains (1) summary
      PTZ00009
      Location:5 → 650
      PTZ00009; heat shock 70 kDa protein; Provisional
    Nucleotide Protein
    Heading Accession and Version

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