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    LOC4350458 UV-B-induced protein At3g17800, chloroplastic [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4350458, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4350458
    Gene description
    UV-B-induced protein At3g17800, chloroplastic
    Locus tag
    OSNPB_110456100
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4350458 in Genome Data Viewer
    Location:
    chromosome: 11
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 11 NC_089045.1 (17303501..17306427, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 11 NC_029266.1 (15447138..15450155, complement)

    Chromosome 11 - NC_089045.1Genomic Context describing neighboring genes Neighboring gene serine hydroxymethyltransferase 4 Neighboring gene rapid alkalinization factor 23 Neighboring gene uncharacterized LOC4350459 Neighboring gene SKP1-like protein 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    UV-B-induced protein At3g17800, chloroplastic
    Names
    Os11g0456100

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089045.1 Reference ASM3414082v1 Primary Assembly

      Range
      17303501..17306427 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015759706.3 → XP_015615192.1  UV-B-induced protein At3g17800, chloroplastic isoform X1

      UniProtKB/TrEMBL
      A0A0P0Y2F2, A0A8J8Y778, A2ZDY7, A3CB08, Q2R4Y3
      Conserved Domains (1) summary
      pfam05542
      Location:171 → 252
      DUF760; Protein of unknown function (DUF760)

    2. XM_015759708.3 → XP_015615194.1  UV-B-induced protein At3g17800, chloroplastic isoform X2

      UniProtKB/TrEMBL
      A0A0P0Y2F2, A0A5S6R789, Q0ISV4, Q2R4Y4
      Conserved Domains (1) summary
      pfam05542
      Location:134 → 215
      DUF760; Protein of unknown function (DUF760)
    Nucleotide Protein
    Heading Accession and Version

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