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    LOC4327738 stearoyl-[acyl-carrier-protein] 9-desaturase 2, chloroplastic-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4327738, updated on 16-Jul-2024

    Summary

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    Gene symbol
    LOC4327738
    Gene description
    stearoyl-[acyl-carrier-protein] 9-desaturase 2, chloroplastic-like
    Locus tag
    OSNPB_010919900
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    SSI2; OsSSI2; OsJ_04566; B1793G04.1
    Expression
    Broad expression in mature seeds (RPKM 111.7), milk grains (RPKM 101.3) and 6 other tissues See more
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    Genomic context

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    See LOC4327738 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (40781462..40785454, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (40146777..40150895, complement)

    Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4324366 Neighboring gene epoxide hydrolase 1 Neighboring gene probable auxin efflux carrier component 5a Neighboring gene CBS domain-containing protein CBSX6 Neighboring gene uncharacterized protein At3g27210

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables stearoyl-[ACP] desaturase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in fatty acid metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in chloroplast stroma IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    stearoyl-[acyl-carrier-protein] 9-desaturase 2, chloroplastic
    Names
    Acyl-[acyl-carrier-protein] desaturase 2
    LOC_Os01g69080
    P0678F11.28
    SSI2 homolog
    Stearoyl-ACP desaturase 2
    putative stearoyl-Acyl-carrier protein desaturase
    NP_001388647.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001401718.1 → NP_001388647.1  stearoyl-[acyl-carrier-protein] 9-desaturase 2, chloroplastic

      Status: VALIDATED

      Source sequence(s)
      AK058979, CI135005
      UniProtKB/Swiss-Prot
      A2WYF4, Q0JGJ9, Q8S059
      UniProtKB/TrEMBL
      A0A0N7KEB1

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

      Range
      40781462..40785454 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8S059.1 GenPept UniProtKB/Swiss-Prot:Q8S059

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