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    LOC4342941 putative lipid-transfer protein DIR1 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4342941, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4342941
    Gene description
    putative lipid-transfer protein DIR1
    Locus tag
    OSNPB_070287400
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4342941 in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 7 NC_089041.1 (11181636..11182397)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 7 NC_029262.1 (11090505..11091255)

    Chromosome 7 - NC_089041.1Genomic Context describing neighboring genes Neighboring gene F-box/FBD/LRR-repeat protein At1g13570 Neighboring gene protein SLOW GREEN 1, chloroplastic Neighboring gene ABC transporter G family member 1 Neighboring gene intracellular protein transport protein USO1-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables fatty acid binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in systemic acquired resistance IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    putative lipid-transfer protein DIR1
    Names
    Os07g0287400
    P0045F02.128

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089041.1 Reference ASM3414082v1 Primary Assembly

      Range
      11181636..11182397
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      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015789861.3 → XP_015645347.1  putative lipid-transfer protein DIR1

      UniProtKB/TrEMBL
      A2YKB6, A3BIQ5, Q8GVT9
      Conserved Domains (1) summary
      cd04660
      Location:30 → 101
      nsLTP_like; Non-specific lipid-transfer protein (nsLTP)-like subfamily; composed of predominantly uncharacterized proteins with similarity to nsLTPs, including Medicago truncatula MtN5, the root-specific Phaseolus vulgaris PVR3, Antirrhinum majus FIL1, and Lilium ...
    Nucleotide Protein
    Heading Accession and Version

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