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    LOC4333416 ATP synthase small subunit 6-A, mitochondrial [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4333416, updated on 13-Jul-2024

    Summary

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    Gene symbol
    LOC4333416
    Gene description
    ATP synthase small subunit 6-A, mitochondrial
    Locus tag
    OSNPB_030606200
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in flowers (RPKM 396.7), flower buds (RPKM 335.2) and 6 other tissues See more
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    Genomic context

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    See LOC4333416 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 3 NC_089037.1 (23599801..23602237)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (22740586..22743072)

    Chromosome 3 - NC_089037.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107280248 Neighboring gene pectinesterase inhibitor 10-like Neighboring gene uncharacterized LOC4333415 Neighboring gene metal transporter Nramp6-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Identification of a mitochondrial ATP synthase small subunit gene (RMtATP6) expressed in response to salts and osmotic stresses in rice (Oryza sativa L.). Zhang X, et al. J Exp Bot, 2006. PMID 16317034
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    ATP synthase small subunit 6-A, mitochondrial
    Names
    Os03g0606200
    mitochondrial ATP synthase 6 KD subunit

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089037.1 Reference ASM3414082v1 Primary Assembly

      Range
      23599801..23602237
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015776391.3 → XP_015631877.1  ATP synthase small subunit 6-A, mitochondrial

      UniProtKB/TrEMBL
      A0A5S6RDJ6, B9F9M8, C8CMP2, D7RXX9, Q0DQD8, Q9AYP0
    Nucleotide Protein
    Heading Accession and Version

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