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    LOC4345710 D-3-phosphoglycerate dehydrogenase 1, chloroplastic [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4345710, updated on 17-Jul-2024

    Summary

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    Gene symbol
    LOC4345710
    Gene description
    D-3-phosphoglycerate dehydrogenase 1, chloroplastic
    Locus tag
    OSNPB_080447000
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    P0409A07.5
    Expression
    Broad expression in flowers (RPKM 137.1), flower buds (RPKM 112.0) and 6 other tissues See more
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    Genomic context

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    See LOC4345710 in Genome Data Viewer
    Location:
    chromosome: 8
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 8 NC_089042.1 (21956693..21961769, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 8 NC_029263.1 (21818085..21823213, complement)

    Chromosome 8 - NC_089042.1Genomic Context describing neighboring genes Neighboring gene protein GLUTAMINE DUMPER 2 Neighboring gene uncharacterized LOC136351281 Neighboring gene protein ecdysoneless homolog Neighboring gene uncharacterized LOC4345712

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables NAD binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables phosphoglycerate dehydrogenase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in L-serine biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in chloroplast stroma IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    D-3-phosphoglycerate dehydrogenase 1, chloroplastic
    Names
    Os08g0447000
    P0429B05.26
    putative phosphoglycerate dehydrogenase

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089042.1 Reference ASM3414082v1 Primary Assembly

      Range
      21956693..21961769 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015795047.3 → XP_015650533.1  D-3-phosphoglycerate dehydrogenase 1, chloroplastic

      UniProtKB/TrEMBL
      B9G167, Q6ZAA5, Q6ZCT8
      Conserved Domains (1) summary
      PRK13581
      Location:78 → 621
      PRK13581; D-3-phosphoglycerate dehydrogenase; Provisional
    Nucleotide Protein
    Heading Accession and Version

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