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    LOC4333548 mediator of RNA polymerase II transcription subunit 19a [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4333548, updated on 16-Jul-2024

    Summary

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    Gene symbol
    LOC4333548
    Gene description
    mediator of RNA polymerase II transcription subunit 19a
    Locus tag
    OSNPB_030641700
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4333548 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 3 NC_089037.1 (25591481..25596418)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (24727346..24732291)

    Chromosome 3 - NC_089037.1Genomic Context describing neighboring genes Neighboring gene BTB/POZ domain-containing protein At1g30440 Neighboring gene uncharacterized LOC4333547 Neighboring gene protein kinase PINOID-like Neighboring gene uncharacterized LOC112938179

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables transcription coregulator activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables transcription factor binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in positive regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of mediator complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    mediator of RNA polymerase II transcription subunit 19a
    Names
    Os03g0641700

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089037.1 Reference ASM3414082v1 Primary Assembly

      Range
      25591481..25596418
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015777634.2 → XP_015633120.1  mediator of RNA polymerase II transcription subunit 19a

      UniProtKB/TrEMBL
      A0A0P0W1F0, B8AN43, B9F9X2, Q6AST9

    2. XM_015777632.3 → XP_015633118.1  mediator of RNA polymerase II transcription subunit 19a

      UniProtKB/TrEMBL
      A0A0P0W1F0, B8AN43, B9F9X2, Q6AST9
    Nucleotide Protein
    Heading Accession and Version

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