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    LOC4336724 SPX domain-containing membrane protein OsI_17046 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4336724, updated on 1-Aug-2024

    Summary

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    Gene symbol
    LOC4336724
    Gene description
    SPX domain-containing membrane protein OsI_17046
    Locus tag
    OSNPB_040573000
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OsJ_15847
    Expression
    Broad expression in leaves before flowering (RPKM 12.6), flower buds (RPKM 7.7) and 6 other tissues See more
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    Genomic context

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    See LOC4336724 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 4 NC_089038.1 (29368712..29375309)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 4 NC_029259.1 (28862578..28869132)

    Chromosome 4 - NC_089038.1Genomic Context describing neighboring genes Neighboring gene zinc finger CCCH domain-containing protein 17-like Neighboring gene uncharacterized LOC136356355 Neighboring gene protein HOTHEAD Neighboring gene copper chaperone for superoxide dismutase, chloroplastic-like Neighboring gene subtilisin-like protease SBT1.3

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables transmembrane transporter activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in transmembrane transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    SPX domain-containing membrane protein Os04g0573000
    Names
    LOC_Os04g48390
    OSJNBa0019K04.6

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001419818.1 → NP_001406747.1  SPX domain-containing membrane protein Os04g0573000

      Status: VALIDATED

      Source sequence(s)
      AK066068, CI150686
      UniProtKB/Swiss-Prot
      A0A0N7KJJ4, B7EBQ8, B8AT51, Q01JW8, Q0JAW2, Q7XTZ1

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089038.1 Reference ASM3414082v1 Primary Assembly

      Range
      29368712..29375309
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015778102.3 → XP_015633588.1  SPX domain-containing membrane protein Os04g0573000 isoform X1

      UniProtKB/Swiss-Prot
      A0A0N7KJJ4, B7EBQ8, B8AT51, Q01JW8, Q0JAW2, Q7XTZ1
      Conserved Domains (2) summary
      cd14479
      Location:2 → 141
      SPX-MFS_plant; SPX domain of proteins found in plants and stramenopiles; most have a C-terminal MFS domain
      cl28910
      Location:247 → 433
      MFS; Major Facilitator Superfamily

    2. XM_015778103.3 → XP_015633589.1  SPX domain-containing membrane protein Os04g0573000 isoform X1

      UniProtKB/Swiss-Prot
      A0A0N7KJJ4, B7EBQ8, B8AT51, Q01JW8, Q0JAW2, Q7XTZ1
      Conserved Domains (2) summary
      cd14479
      Location:2 → 141
      SPX-MFS_plant; SPX domain of proteins found in plants and stramenopiles; most have a C-terminal MFS domain
      cl28910
      Location:247 → 433
      MFS; Major Facilitator Superfamily

    3. XM_015778104.3 → XP_015633590.1  SPX domain-containing membrane protein Os04g0573000 isoform X1

      UniProtKB/Swiss-Prot
      A0A0N7KJJ4, B7EBQ8, B8AT51, Q01JW8, Q0JAW2, Q7XTZ1
      Conserved Domains (2) summary
      cd14479
      Location:2 → 141
      SPX-MFS_plant; SPX domain of proteins found in plants and stramenopiles; most have a C-terminal MFS domain
      cl28910
      Location:247 → 433
      MFS; Major Facilitator Superfamily

    4. XM_066309181.1 → XP_066165278.1  SPX domain-containing membrane protein Os04g0573000 isoform X1

      UniProtKB/Swiss-Prot
      A0A0N7KJJ4, B7EBQ8, B8AT51, Q01JW8, Q0JAW2, Q7XTZ1
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q0JAW2.2 GenPept UniProtKB/Swiss-Prot:Q0JAW2

    Gene LinkOut

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    Research Materials