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    LOC9271405 probable protein phosphatase 2C 39 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 9271405, updated on 1-Aug-2024

    Summary

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    Gene symbol
    LOC9271405
    Gene description
    probable protein phosphatase 2C 39
    Locus tag
    OSNPB_040403600
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OsPP2C39; OsJ_014105; OJ000315_02.1
    Expression
    Ubiquitous expression in roots before flowering (RPKM 39.7), leaves after flowering (RPKM 37.3) and 6 other tissues See more
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    Genomic context

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    See LOC9271405 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 4 NC_089038.1 (20388997..20392999, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 4 NC_029259.1 (20021277..20025223, complement)

    Chromosome 4 - NC_089038.1Genomic Context describing neighboring genes Neighboring gene uncharacterized protein At1g32220, chloroplastic Neighboring gene uncharacterized LOC136356296 Neighboring gene uncharacterized LOC9267281 Neighboring gene desiccation-related protein PCC13-62

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein serine/threonine phosphatase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein dephosphorylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    probable protein phosphatase 2C 39
    Names
    LOC_Os04g33080
    OSJNBb0118P14.8
    Os04g0403600
    NP_001411470.1
    XP_066165308.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001424541.1 → NP_001411470.1  probable protein phosphatase 2C 39

      Status: VALIDATED

      Source sequence(s)
      AK243107, CB654669, CI611210
      UniProtKB/Swiss-Prot
      A0A0P0W9R4, Q0JDH3, Q7XVF9
      UniProtKB/TrEMBL
      C7J1A8

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089038.1 Reference ASM3414082v1 Primary Assembly

      Range
      20388997..20392999 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_066309211.1 → XP_066165308.1  probable protein phosphatase 2C 39 isoform X1

      UniProtKB/Swiss-Prot
      A0A0P0W9R4, Q0JDH3, Q7XVF9
      UniProtKB/TrEMBL
      C7J1A8
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q7XVF9.2 GenPept UniProtKB/Swiss-Prot:Q7XVF9

    Gene LinkOut

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