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    LOC4349728 heterogeneous nuclear ribonucleoprotein Q [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4349728, updated on 13-Jul-2024

    Summary

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    Gene symbol
    LOC4349728
    Gene description
    heterogeneous nuclear ribonucleoprotein Q
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in flower buds (RPKM 13.2), flowers (RPKM 12.3) and 6 other tissues See more
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    Genomic context

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    See LOC4349728 in Genome Data Viewer
    Location:
    chromosome: 11
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 11 NC_089045.1 (1866142..1870909)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 11 NC_029266.1 (1821332..1828289)

    Chromosome 11 - NC_089045.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4349726 Neighboring gene probable sugar phosphate/phosphate translocator At4g32390 Neighboring gene basic leucine zipper 19 Neighboring gene scarecrow-like protein 30

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables mRNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    heterogeneous nuclear ribonucleoprotein Q
    Names
    Os11g0139500

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089045.1 Reference ASM3414082v1 Primary Assembly

      Range
      1866142..1870909
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015762079.3 → XP_015617565.1  heterogeneous nuclear ribonucleoprotein Q isoform X1

      UniProtKB/TrEMBL
      A0A0P0XYR2
      Conserved Domains (2) summary
      smart00360
      Location:144 → 213
      RRM; RNA recognition motif
      cl17169
      Location:312 → 390
      RRM_SF; RNA recognition motif (RRM) superfamily

    2. XM_066305358.1 → XP_066161455.1  heterogeneous nuclear ribonucleoprotein Q isoform X2

    3. XM_066305357.1 → XP_066161454.1  heterogeneous nuclear ribonucleoprotein Q isoform X2

    Nucleotide Protein
    Heading Accession and Version

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