U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    LOC4346289 NADH dehydrogenase [ubiquinone] iron-sulfur protein 5-B [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4346289, updated on 13-Jul-2024

    Summary

    Go to the top of the page Help
    Gene symbol
    LOC4346289
    Gene description
    NADH dehydrogenase [ubiquinone] iron-sulfur protein 5-B
    Locus tag
    OSNPB_080556600
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OJ1150_A11.14
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See LOC4346289 in Genome Data Viewer
    Location:
    chromosome: 8
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 8 NC_089042.1 (28004078..28005701)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 8 NC_029263.1 (27856776..27858463)

    Chromosome 8 - NC_089042.1Genomic Context describing neighboring genes Neighboring gene probable protein S-acyltransferase 19 Neighboring gene peroxisomal ATPase PEX1 Neighboring gene phosphatidylinositol-3-phosphatase myotubularin-1 Neighboring gene transfer RNA arginine (anticodon CCG)

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in mitochondrial respiratory chain complex I assembly IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    NADH dehydrogenase [ubiquinone] iron-sulfur protein 5-B
    Names
    Os08g0556600
    putative fiber protein Fb14

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089042.1 Reference ASM3414082v1 Primary Assembly

      Range
      28004078..28005701
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015794785.3 → XP_015650271.1  NADH dehydrogenase [ubiquinone] iron-sulfur protein 5-B

      UniProtKB/TrEMBL
      A2YY10, A3BVP0, Q0J3S4, Q6ZJ19
      Conserved Domains (1) summary
      pfam10200
      Location:10 → 66
      Ndufs5; NADH:ubiquinone oxidoreductase, NDUFS5-15kDa
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials