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    LOC4338602 nascent polypeptide-associated complex subunit alpha-like protein 1 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4338602, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4338602
    Gene description
    nascent polypeptide-associated complex subunit alpha-like protein 1
    Locus tag
    OSNPB_050373700
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in flower buds (RPKM 187.9), leaves after flowering (RPKM 108.1) and 6 other tissues See more
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    Genomic context

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    See LOC4338602 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 5 NC_089039.1 (18112871..18114745)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 5 NC_029260.1 (18012285..18014182)

    Chromosome 5 - NC_089039.1Genomic Context describing neighboring genes Neighboring gene RNA-binding protein BRN1 Neighboring gene uncharacterized LOC4338601 Neighboring gene eukaryotic peptide chain release factor subunit 1-2 Neighboring gene uncharacterized LOC4338604 Neighboring gene cytokinin dehydrogenase 9

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Functional isolation of novel nuclear proteins showing a variety of subnuclear localizations. Moriguchi K, et al. Plant Cell, 2005 Feb. PMID 15659629, Free PMC Article
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables unfolded protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein targeting to membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of nascent polypeptide-associated complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    nascent polypeptide-associated complex subunit alpha-like protein 1
    Names
    Os05g0373700
    nascent polypeptide associated complex alpha chain

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089039.1 Reference ASM3414082v1 Primary Assembly

      Range
      18112871..18114745
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015781836.3 → XP_015637322.1  nascent polypeptide-associated complex subunit alpha-like protein 1

      UniProtKB/TrEMBL
      A0A5S6RBL0, Q0DIP0, Q6I5P5, Q7XXR8
      Conserved Domains (2) summary
      cd14358
      Location:168 → 204
      UBA_NAC_euk; UBA-like domain found in nascent polypeptide-associated complex subunit alpha (NACA) and its homologs mainly found in eukaryotes
      cd22054
      Location:77 → 124
      NAC_NACA; nascent polypeptide-associated complex (NAC), alpha subunit
    Nucleotide Protein
    Heading Accession and Version

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