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    LOC4342978 protein PIN-LIKES 7 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4342978, updated on 1-Aug-2024

    Summary

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    Gene symbol
    LOC4342978
    Gene description
    protein PIN-LIKES 7
    Locus tag
    OSNPB_070300200
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    B1114D08.4; B1114D08.5
    Expression
    Ubiquitous expression in flowers (RPKM 7.4), flower buds (RPKM 6.6) and 6 other tissues See more
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    Genomic context

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    See LOC4342978 in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 7 NC_089041.1 (11962580..11965684)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 7 NC_029262.1 (11845795..11851820)

    Chromosome 7 - NC_089041.1Genomic Context describing neighboring genes Neighboring gene pentatricopeptide repeat-containing protein At3g26782, mitochondrial Neighboring gene serine/threonine-protein phosphatase 7 long form homolog Neighboring gene pentatricopeptide repeat-containing protein At1g63330-like Neighboring gene uncharacterized LOC136357365 Neighboring gene aspartokinase 2, chloroplastic

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in endoplasmic reticulum to cytosol auxin transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    LOW QUALITY PROTEIN: protein PIN-LIKES 7
    Names
    B1032F05.34
    B1032F05.35
    Os07g0300200
    auxin efflux carrier protein -like
    auxin efflux carrier protein family-like protein
    pentatricopeptide repeat-containing protein At1g63330
    putative fertility restorer homologue

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089041.1 Reference ASM3414082v1 Primary Assembly

      Range
      11962580..11965684
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015792017.3 → XP_015647503.2  LOW QUALITY PROTEIN: protein PIN-LIKES 7

      UniProtKB/TrEMBL
      B8BEC9
    Nucleotide Protein
    Heading Accession and Version

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