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    LOC4340601 tRNA (guanine-N(7)-)-methyltransferase-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4340601, updated on 21-Dec-2023

    Summary

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    Gene symbol
    LOC4340601
    Gene description
    tRNA (guanine-N(7)-)-methyltransferase-like
    Locus tag
    OSNPB_060236900
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OsJ_20740
    Expression
    Ubiquitous expression in flower buds (RPKM 12.4), roots before flowering (RPKM 9.2) and 6 other tissues See more
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    Genomic context

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    See LOC4340601 in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    102 current IRGSP-1.0 (GCF_001433935.1) 6 NC_029261.1 (7118787..7120431)

    Chromosome 6 - NC_029261.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4340599 Neighboring gene cyclin-D1-1 Neighboring gene ankyrin repeat domain-containing protein EMB506, chloroplastic Neighboring gene uncharacterized protein YuxK

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_029261.1 Chromosome 6 Reference IRGSP-1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables tRNA (guanine(46)-N7)-methyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in RNA (guanine-N7)-methylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in tRNA methylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of tRNA methyltransferase complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    tRNA (guanine-N(7)-)-methyltransferase
    Names
    LOC_Os06g12990
    OSJNBa0068B06.2
    OSJNBa0080E19.41
    methyltransferase-like
    tRNA (guanine(46)-N(7))-methyltransferase
    tRNA(m7G46)-methyltransferase
    XP_015643815.1
    XP_015643817.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001421513.1 → NP_001408442.1  tRNA (guanine-N(7)-)-methyltransferase isoform 1

      Status: VALIDATED

      Source sequence(s)
      AP014962

    2. NM_001421514.1 → NP_001408443.1  tRNA (guanine-N(7)-)-methyltransferase isoform 2

      Status: VALIDATED

      Source sequence(s)
      AP014962, CI736594
      UniProtKB/Swiss-Prot
      A2YB34, Q67V78

    RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference IRGSP-1.0 Primary Assembly

    Genomic

    1. NC_029261.1 Reference IRGSP-1.0 Primary Assembly

      Range
      7118787..7120431
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015788331.2 → XP_015643817.1  tRNA (guanine-N(7)-)-methyltransferase isoform X2

      UniProtKB/Swiss-Prot
      Q67V78
      Conserved Domains (1) summary
      pfam02390
      Location:76 → 250
      Methyltransf_4; Putative methyltransferase

    2. XM_015788329.2 → XP_015643815.1  tRNA (guanine-N(7)-)-methyltransferase isoform X1

      Conserved Domains (1) summary
      pfam02390
      Location:92 → 266
      Methyltransf_4; Putative methyltransferase
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q67V78.1 GenPept UniProtKB/Swiss-Prot:Q67V78

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