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    LOC4326431 vacuole membrane protein KMS1 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4326431, updated on 17-Jul-2024

    Summary

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    Gene symbol
    LOC4326431
    Gene description
    vacuole membrane protein KMS1
    Locus tag
    OSNPB_010778700
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    P0010B10.5
    Expression
    Ubiquitous expression in flowers (RPKM 27.4), flower buds (RPKM 24.7) and 6 other tissues See more
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    Genomic context

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    See LOC4326431 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (33562807..33569101)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (32956915..32963293)

    Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC9268283 Neighboring gene protein SOSEKI 1 Neighboring gene insulin-degrading enzyme-like 1, peroxisomal Neighboring gene insulin-degrading enzyme-like 1, peroxisomal

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Component Evidence Code Pubs
    located_in endomembrane system IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in endoplasmic reticulum IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    vacuole membrane protein KMS1
    Names
    Os01g0778700
    putative vacuole membrane protein 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

      Range
      33562807..33569101
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015766030.2 → XP_015621516.1  vacuole membrane protein KMS1

      UniProtKB/TrEMBL
      A0A0N7KDU9, B8AAE2, B9ETB6, Q5ZCF3
      Conserved Domains (1) summary
      cl00429
      Location:255 → 311
      VTT; VMP1, TMEM41, and TVP38 (VTT) domain
    Nucleotide Protein
    Heading Accession and Version

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