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    LOC4339457 beta-galactosidase 8-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4339457, updated on 16-Jul-2024

    Summary

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    Gene symbol
    LOC4339457
    Gene description
    beta-galactosidase 8-like
    Locus tag
    OSNPB_050539400
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OsJ_19375
    Expression
    Ubiquitous expression in roots before flowering (RPKM 28.1), milk grains (RPKM 27.2) and 6 other tissues See more
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    Genomic context

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    See LOC4339457 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    19
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 5 NC_089039.1 (26912499..26919629, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 5 NC_029260.1 (26794391..26801519, complement)

    Chromosome 5 - NC_089039.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107281000 Neighboring gene uncharacterized LOC9270344 Neighboring gene putative uncharacterized protein YDL057W Neighboring gene probable ADP,ATP carrier protein At5g56450

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Large-scale identification of expressed sequence tags involved in rice and rice blast fungus interaction. Jantasuriyarat C, et al. Plant Physiol, 2005 May. PMID 15888683, Free PMC Article
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables beta-galactosidase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in carbohydrate metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in vacuole IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    beta-galactosidase 8
    Names
    LOC_Os05g46200
    Lactase 8
    OSJNBa0052K01.15
    NP_001407691.1
    XP_015639207.1
    XP_015639208.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001420762.1 → NP_001407691.1  beta-galactosidase 8 precursor

      Status: VALIDATED

      Source sequence(s)
      AK068572, CB639584, CB645447, CF305053, CI026295, CI120299, CI578079
      UniProtKB/Swiss-Prot
      B7EF25, Q0DGD7, Q53WK7
      UniProtKB/TrEMBL
      B8AW61

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089039.1 Reference ASM3414082v1 Primary Assembly

      Range
      26912499..26919629 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015783722.3 → XP_015639208.1  beta-galactosidase 8 isoform X2

      Conserved Domains (2) summary
      pfam13364
      Location:470 → 534
      BetaGal_dom4_5; Beta-galactosidase jelly roll domain
      cl07893
      Location:1 → 250
      AmyAc_family; Alpha amylase catalytic domain family

    2. XM_015783721.2 → XP_015639207.1  beta-galactosidase 8 isoform X1

      Conserved Domains (2) summary
      pfam13364
      Location:561 → 625
      BetaGal_dom4_5; Beta-galactosidase jelly roll domain
      cl07893
      Location:40 → 341
      AmyAc_family; Alpha amylase catalytic domain family
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q0DGD7.1 GenPept UniProtKB/Swiss-Prot:Q0DGD7

    Gene LinkOut

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