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    LOC4339406 chaperone protein dnaJ C76, chloroplastic [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4339406, updated on 16-Jul-2024

    Summary

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    Gene symbol
    LOC4339406
    Gene description
    chaperone protein dnaJ C76, chloroplastic
    Locus tag
    OSNPB_050529700
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4339406 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 5 NC_089039.1 (26428778..26432160, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 5 NC_029260.1 (26310846..26314214, complement)

    Chromosome 5 - NC_089039.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4339404 Neighboring gene protein STICHEL-like 4 Neighboring gene ALA-interacting subunit 1 Neighboring gene uncharacterized LOC4339408

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables electron transfer activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables iron ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    chaperone protein dnaJ C76, chloroplastic
    Names
    Os05g0529700

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089039.1 Reference ASM3414082v1 Primary Assembly

      Range
      26428778..26432160 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015782183.3 → XP_015637669.1  chaperone protein dnaJ C76, chloroplastic

      UniProtKB/TrEMBL
      A0A0P0WPK7, B8B073, B9FL98, Q65XB8
      Conserved Domains (2) summary
      pfam00226
      Location:79 → 141
      DnaJ; DnaJ domain
      pfam13370
      Location:166 → 220
      Fer4_13; 4Fe-4S single cluster domain of Ferredoxin I

    RNA

    1. XR_001545739.3 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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