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    LOC4327073 B-box zinc finger protein 22 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4327073, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4327073
    Gene description
    B-box zinc finger protein 22
    Locus tag
    OSNPB_010202500
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in leaves before flowering (RPKM 25.8), leaves after flowering (RPKM 21.6) and 6 other tissues See more
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    Genomic context

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    See LOC4327073 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (5649110..5650960)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (5639753..5641491)

    Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107276816 Neighboring gene aquaporin NIP1-2-like Neighboring gene uncharacterized LOC4327072 Neighboring gene protein FLOWERING LOCUS T 1 Neighboring gene aquaporin NIP1-2

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in photomorphogenesis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    B-box zinc finger protein 22
    Names
    Os01g0202500

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

      Range
      5649110..5650960
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015774835.3 → XP_015630321.1  B-box zinc finger protein 22

      UniProtKB/TrEMBL
      A0A0P0UZC2, Q0JPT7
      Conserved Domains (1) summary
      smart00336
      Location:62 → 104
      BBOX; B-Box-type zinc finger
    Nucleotide Protein
    Heading Accession and Version

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