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    LOC4328938 BTB/POZ domain-containing protein POB1 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4328938, updated on 13-Jul-2024

    Summary

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    Gene symbol
    LOC4328938
    Gene description
    BTB/POZ domain-containing protein POB1
    Locus tag
    OSNPB_020260700
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in flower buds (RPKM 85.9), mature seeds (RPKM 61.1) and 6 other tissues See more
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    Genomic context

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    See LOC4328938 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (9108770..9113934)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (9082726..9087951)

    Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene UPF0161 protein At3g09310 Neighboring gene uncharacterized protein At5g41620 Neighboring gene uncharacterized LOC4328939 Neighboring gene uncharacterized LOC112937994 Neighboring gene ubiquitin-conjugating enzyme E2 5B-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in response to red light IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    BTB/POZ domain-containing protein POB1
    Names
    B1178F07.33
    Bric-a-Brac, Tramtrack, Broad Complex domain with E1 subfamily conserved sequence E1-BTB1
    OSJNBa0060K08.43
    Os02g0260700
    putative BTB/POZ domain-containing protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

      Range
      9108770..9113934
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015771544.3 → XP_015627030.1  BTB/POZ domain-containing protein POB1

      UniProtKB/TrEMBL
      B8AFA8, Q0E290, Q6K229, Q6K2Q4
      Conserved Domains (2) summary
      PHA03098
      Location:162 → 353
      PHA03098; kelch-like protein; Provisional
      cd18186
      Location:150 → 228
      BTB_POZ_ZBTB_KLHL-like; BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in zinc finger and BTB domain-containing (ZBTB) proteins, Kelch-like (KLHL) proteins, and similar proteins
    Nucleotide Protein
    Heading Accession and Version

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