LOC4352457 calmodulin-binding protein 60 C [Oryza sativa Japonica Group (Japanese rice)] - Gene

Summary

Gene symbol: LOC4352457
Gene description: calmodulin-binding protein 60 C
Locus tag: OSNPB_120547600
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Oryza sativa Japonica Group
Lineage: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Expression: Biased expression in roots before flowering (RPKM 168.7), leaves after flowering (RPKM 117.0) and 2 other tissues See more
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Genomic context

Location:: chromosome: 12

Exon count:: 11

Annotation release	Status	Assembly	Chr	Location
RS_2024_06	current	ASM3414082v1 (GCF_034140825.1)	12	NC_089046.1 (22820683..22824287, complement)
102	previous assembly	IRGSP-1.0 (GCF_001433935.1)	12	NC_029267.1 (22133330..22136985, complement)

Chromosome 12 - NC_089046.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Expression

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See details

Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
BioProject: PRJNA243371
Publication: PMID 26387578
Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Gene Ontology Provided by RefSeq

Function	Evidence Code	Pubs
enables DNA-binding transcription factor activity	IEA Inferred from Electronic Annotation more info	PubMed
enables calmodulin binding	IEA Inferred from Electronic Annotation more info	PubMed
enables sequence-specific DNA binding	IEA Inferred from Electronic Annotation more info	PubMed

Process	Evidence Code	Pubs
involved_in regulation of salicylic acid biosynthetic process	IEA Inferred from Electronic Annotation more info	PubMed

Component	Evidence Code	Pubs
located_in nucleus	IEA Inferred from Electronic Annotation more info	PubMed

General protein information

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Preferred Names: calmodulin-binding protein 60 C

Names: Os12g0547600

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001423560.1 → NP_001410489.1 calmodulin-binding protein 60 C

Status: VALIDATED

Source sequence(s)

AK067126, CB638240, CI397835

UniProtKB/TrEMBL

A3CI75, Q2QP06

RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

NC_089046.1 Reference ASM3414082v1 Primary Assembly

Range

22820683..22824287 complement

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_015765134.3 → XP_015620620.1 calmodulin-binding protein 60 C isoform X1

UniProtKB/TrEMBL

A3CI75

Conserved Domains (1) summary

pfam07887
Location:108 → 398

Calmodulin_bind; Calmodulin binding protein-like