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    LOC4330628 U-box domain-containing protein 11 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4330628, updated on 17-Jul-2024

    Summary

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    Gene symbol
    LOC4330628
    Gene description
    U-box domain-containing protein 11
    Locus tag
    OSNPB_020732200
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Biased expression in flowers (RPKM 18.0), roots before flowering (RPKM 17.5) and 3 other tissues See more
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    Genomic context

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    See LOC4330628 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (31012678..31017286)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (30517837..30522427)

    Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene 3-ketoacyl-CoA synthase 6 Neighboring gene uncharacterized LOC136355290 Neighboring gene uncharacterized protein At1g66480 Neighboring gene protein TIFY 8-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ubiquitin-protein transferase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein ubiquitination IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    U-box domain-containing protein 11
    Names
    Os02g0732200
    P0643A10.18
    putative Avr9/Cf-9 rapidly elicited protein 276
    putative spotted leaf 11

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

      Range
      31012678..31017286
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015767772.3 → XP_015623258.1  U-box domain-containing protein 11

      UniProtKB/TrEMBL
      Q0DXV0, Q6Z2K3
      Conserved Domains (4) summary
      PLN03200
      Location:381 → 623
      PLN03200; cellulose synthase-interactive protein; Provisional
      sd00044
      Location:520 → 547
      HEAT; HEAT repeat [structural motif]
      sd00043
      Location:398 → 423
      ARM; armadillo repeat [structural motif]
      cd16664
      Location:266 → 307
      RING-Ubox_PUB; U-box domain, a modified RING finger, found in Arabidopsis plant U-box proteins (AtPUB) and similar proteins
    Nucleotide Protein
    Heading Accession and Version

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