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    LOC4333307 probable polyamine transporter At1g31830 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4333307, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4333307
    Gene description
    probable polyamine transporter At1g31830
    Locus tag
    OSNPB_030576900
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4333307 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 3 NC_089037.1 (21949807..21954743)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (21091942..21096894)

    Chromosome 3 - NC_089037.1Genomic Context describing neighboring genes Neighboring gene acyl-CoA-binding domain-containing protein 3-like Neighboring gene large ribosomal subunit protein eL13y Neighboring gene small ribosomal subunit protein uS3y Neighboring gene small nucleolar RNA snoR143 Neighboring gene small nucleolar RNA snoR143

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Paraquat Resistant1, a Golgi-localized putative transporter protein, is involved in intracellular transport of paraquat. Li J, et al. Plant Physiol, 2013 May. PMID 23471133, Free PMC Article
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables transmembrane transporter activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in transmembrane transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    probable polyamine transporter At1g31830
    Names
    Os03g0576900

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089037.1 Reference ASM3414082v1 Primary Assembly

      Range
      21949807..21954743
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015776402.3 → XP_015631888.1  probable polyamine transporter At1g31830 isoform X1

      UniProtKB/TrEMBL
      A3AJT5, Q0DQN6, Q10HT5
      Conserved Domains (1) summary
      COG0531
      Location:128 → 535
      PotE; Amino acid transporter [Amino acid transport and metabolism]

    2. XM_015776403.3 → XP_015631889.1  probable polyamine transporter At1g31830 isoform X2

      UniProtKB/TrEMBL
      A0A0P0W0G9, A3AJT5, Q75G90
      Conserved Domains (1) summary
      COG0531
      Location:70 → 477
      PotE; Amino acid transporter [Amino acid transport and metabolism]

    3. XM_015776404.3 → XP_015631890.1  probable polyamine transporter At1g31830 isoform X3

      UniProtKB/TrEMBL
      A3AJT5, Q10HT3
      Conserved Domains (1) summary
      COG0531
      Location:53 → 460
      PotE; Amino acid transporter [Amino acid transport and metabolism]
    Nucleotide Protein
    Heading Accession and Version

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